Gene Information

Name : HPLT_02655 (HPLT_02655)
Accession : YP_005772674.1
Strain : Helicobacter pylori Lithuania75
Genome accession: NC_017362
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein (cag17)
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 528898 - 529818 bp
Length : 921 bp
Strand : +
Note : -

DNA sequence : 
TTGAAAAGTATCTTCAAAAAACTAGGTTCTGTCGCTCTTTATTCTTTAGTTGTTTATGGGGGCTTAAACGCTATCAATAC
AGCATTATTGCCGAGTGAATACAAAAAATTAGTGGCTTTAGGCTTTAAAAAAATCAAAACACTCCATCAAAGACATGACG
ACGAAGAAATTACAAAAGAGGAAAAAGAATTCGCCACTAACGCTTTGAGAGAAAAATTACGAAATGATAGGGCGAGAGCA
GAGCAAATTCAAAAGAATATTGAAGCGTTTGAAAAAAAGAACAACTCTTCTATTCAAAAAAAAGCGGCTAAGCACAAAGG
ATTGCAAGAATTAAACGAAATTAACGCTCACCCTTTGAATGGCAACCCTAATAGCAATTCTTCCGCTGAAACCAAATCTA
ATAAAGATGATAACTTTGATGAGATGATCAATAAGGTGAATGAAGCTTTTGTAAAACCTGCTGCTCCGCTTGTGCCTGAT
GAGTGGAGAACACCTGAAATTGAAATCATTATCAATGAGTGTATTATTTCAAGCAACGATTACGATGGGTTAAGAAAGTG
TTTGATCAAAGGAATCAAGGATCAAAAAATTCTTACCCCCTTATTAGAAAAAATTCAAGAAATAGAGACAGAAAATAACA
AGTTTTCTAGACAACGCTTGAGTGGTTTAAAACTCGCTCTCAATAACAGCAACAATAGAACCTTTCTTATAGCTTCGTGC
GCTATTTGTGAGAAGAGAAAAAAAGAAATGGAGCAAGAAAATAACTACCAAGATACTACAAATGCAAGTGAATTTGGAGC
TACTGATACAAAAGAAAACGAAGCAAAAGATGCAGCATTCTCAAACAATCGCTCTAAATCTGAACTGCCCAATAGCGTCA
TTAATCAAATAGAACAAAGCATCGCTCATGGAAAAAAATAG

Protein sequence : 
MKSIFKKLGSVALYSLVVYGGLNAINTALLPSEYKKLVALGFKKIKTLHQRHDDEEITKEEKEFATNALREKLRNDRARA
EQIQKNIEAFEKKNNSSIQKKAAKHKGLQELNEINAHPLNGNPNSNSSAETKSNKDDNFDEMINKVNEAFVKPAAPLVPD
EWRTPEIEIIINECIISSNDYDGLRKCLIKGIKDQKILTPLLEKIQEIETENNKFSRQRLSGLKLALNNSNNRTFLIASC
AICEKRKKEMEQENNYQDTTNASEFGATDTKENEAKDAAFSNNRSKSELPNSVINQIEQSIAHGKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cag17 AAR03872.1 Cag17 Virulence cag PAI Protein 4e-128 98
HP0538 ABC25004.1 cag pathogenicity island protein N Virulence cag PAI Protein 2e-123 97
HP0538 NP_207334.1 cag pathogenicity island protein (cag17) Virulence cag PAI Protein 1e-127 97
cagN YP_005774533.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-125 97
cag17 AAR03961.1 Cag17 Virulence cag PAI Protein 5e-126 97
cagN YP_003728726.1 cag pathogenicity island protein N Virulence cag PAI Protein 7e-127 97
cag17 AAR03930.1 Cag17 Virulence cag PAI Protein 2e-126 97
HP0538 BAD14036.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-126 96
HP0538 BAD13981.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-124 96
HP0538 BAD13871.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-125 96
cagN YP_005775738.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-125 96
cagN AAF80207.2 CagN Virulence cag PAI Protein 7e-126 96
HP0538 BAD13954.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-120 95
cagN NP_223204.1 cag island protein Virulence cag PAI Protein 7e-126 95
HP0538 BAD13844.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-122 95
HP0538 BAD13790.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-119 95
cagN YP_005779055.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-119 95
HP0538 BAD13926.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-124 95
cagN YP_005777279.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-120 95
HP0538 BAD13817.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-120 95
HP0538 BAD14063.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-120 95
cag17 AAR03900.1 Cag17 Virulence cag PAI Protein 9e-124 95
HP0538 BAD13899.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-119 94
HP0538 BAD14009.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-120 94

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPLT_02655 YP_005772674.1 cag pathogenicity island protein (cag17) VFG0297 Protein 5e-128 97