Gene Information

Name : HPLT_02635 (HPLT_02635)
Accession : YP_005772670.1
Strain : Helicobacter pylori Lithuania75
Genome accession: NC_017362
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein U
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 523434 - 524084 bp
Length : 651 bp
Strand : +
Note : -

DNA sequence : 
ATGAACGATACAACAGAGCGTCATGGATCCAATCCGCTAAATGCCCCACCACCTAGCAACTCACAGAGCAATGATCTTTT
AAATTTGCTAGACTCGTTATATCCCAAAGGGAGTTTAGGGGAGCAAAGATTTCACGAAGCTTTAAAGAATCAAGAAGAGT
TGAAAAATATCCTGATAGAAATAGAAAAGCTACCGCAAGAAAAAAGGTATGAACTTCTGATGCAGATAGGACAAGCCAAA
CAGAGAATAATGGAAGCATACGCTCATTCATTCTTAGGATATATAGGGGGACTAGAGCATCTGTTAGGATTATGTATGGG
TGGGATATTTGTTTTGTTTGCAATCTATTTTGTATTTTTAAGAACTAGCAAAAATGTGGATTTGGTGGAAAGTTTAAAAA
CAAAACTAAAACTTCAGTATTTTTACTATGCCTTTGGTGTGGGTGCGGTTTTGTTTTTTGGATTAGAAACAATTAGATCT
ATTTATGAACTGTATATATTAGGAATTGGTAGCACTAACGACAAGGTGCTTTTTGTTTTGAAAAACATTTGCTTCATAGG
TATGGGGTATTTGATTTATAAAGTTATTAAGGTTATTGGTATAAAAAATTTTATCAATGGTCTTTTCACTTCAAAGAAAC
AAGAGCAATAA

Protein sequence : 
MNDTTERHGSNPLNAPPPSNSQSNDLLNLLDSLYPKGSLGEQRFHEALKNQEELKNILIEIEKLPQEKRYELLMQIGQAK
QRIMEAYAHSFLGYIGGLEHLLGLCMGGIFVLFAIYFVFLRTSKNVDLVESLKTKLKLQYFYYAFGVGAVLFFGLETIRS
IYELYILGIGSTNDKVLFVLKNICFIGMGYLIYKVIKVIGIKNFINGLFTSKKQEQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0531 BAD14002.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-76 99
cagU AGC69798.1 cag pathogenicity island protein U Virulence cag PAI Protein 6e-77 99
HP0531 BAD13974.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-77 99
HP0531 BAD13837.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-76 99
cag-U AAF80202.1 Cag-U Virulence cag PAI Protein 4e-77 99
HP0531 BAD14030.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-77 99
cagU YP_005775734.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-76 99
cag11 AAR03866.1 Cag11 Virulence cag PAI Protein 3e-77 99
cagU YP_003728733.1 cag pathogenicity island protein U Virulence cag PAI Protein 9e-77 99
HP0531 BAD13864.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-76 99
cag11 AAR03924.1 Cag11 Virulence cag PAI Protein 2e-77 99
HP0531 BAD13892.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-75 98
HP0531 BAD13810.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-75 98
cagU YP_005777275.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-76 98
HP0531 BAD13947.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-76 98
cagU YP_005779059.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-76 98
HP0531 BAD13783.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-76 98
cagU YP_005774538.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-76 98
HP0531 BAD14056.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-76 98
cag11 AAR03955.1 Cag11 Virulence cag PAI Protein 1e-76 98
orf18 NP_223198.1 cag island protein Virulence cag PAI Protein 9e-76 98
HP0531 NP_207327.1 cag pathogenicity island protein (cag11) Virulence cag PAI Protein 6e-76 98
HP0531 BAD13919.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-75 98
cag11 AAR03894.1 Cag11 Virulence cag PAI Protein 9e-77 97

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPLT_02635 YP_005772670.1 cag pathogenicity island protein U VFG0291 Protein 2e-76 98