Gene Information

Name : HPLT_02600 (HPLT_02600)
Accession : YP_005772664.1
Strain : Helicobacter pylori Lithuania75
Genome accession: NC_017362
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein alpha
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 511533 - 512525 bp
Length : 993 bp
Strand : -
Note : COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis

DNA sequence : 
ATGACTGAAGACAGATTGAGTGCAGAAGATAAAAAATTTCTAGAAGTAGAAAGAGCTTTAAAAGAAGCGGCATTAAATCC
TTTAAGGCATGCTACTGAAGAACTTTTTGGTGATTTTTTAAAAATGGAAAATATCACTGAGATTTGTTACAATGGGGACA
AGGTTGTATGGGTTTTAAAAAATAATGGCGAATGGCAACCATTTGATGTGAGAGACAGGAAAGCCTTTAGTCTGTCTCGT
TTAATGCATTTTGCTCGGTGTTGTGCAAGTTTTAAGAAAAAAACAATAGACAACTATGAAAATCCTATTTTGAGCAGCAA
TTTAGCGAATGGTGAAAGGGTGCAGATTGTCCTTTCCCCTGTTACAGTTAATGATGAAACCATTTCCATATCTATAAGGA
TACCTAGCAAAACAACCTATCCTCATAGCTTCTTTGAAGAGCAGGGTTTTTATAATTTACTAGATAACAAAGAACAAGCG
ATCAGCGCGATTAAAGATGGTATTGCTATTGGTAAAAATGTGATTGTTTGTGGTGGCACAGGAAGCGGTAAAACGACTTA
TATCAAAAGCATCATGGAGTTTATCCCCAAAGAAGAAAGGATCATATCCATTGAAGACACCGAAGAGATTGTATTCAAAC
ACCACAAGAATTACACGCAGCTTTTTTTTGGTGGGAATATCACCTCTGCTGATTGCTTAAAGTCATGTTTGAGAATGCGG
CCTGATAGAATCATTTTAGGAGAACTCAGAAGCAGTGAGGCATACGATTTTTATAATGTGCTTTGTAGCGGTCATAAAGG
CACACTAACCACTCTACATGCAGGGAGCAGTGAAGAAGCGTTTATCCGTTTGGCCAACATGAGTTCATCTAATAGCGCAG
CAAGGAATATCAAGTTTGAAAGTCTTATTGAGGGCTTTAAAGATTTAATTGATATGATTGTCCATATCAACCACCACAAA
CAGTGTGATGAATTTTATATCAAACATAGGTAG

Protein sequence : 
MTEDRLSAEDKKFLEVERALKEAALNPLRHATEELFGDFLKMENITEICYNGDKVVWVLKNNGEWQPFDVRDRKAFSLSR
LMHFARCCASFKKKTIDNYENPILSSNLANGERVQIVLSPVTVNDETISISIRIPSKTTYPHSFFEEQGFYNLLDNKEQA
ISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMR
PDRIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNSAARNIKFESLIEGFKDLIDMIVHINHHK
QCDEFYIKHR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0525 BAD13996.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-149 99
HP0525 BAD13886.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-148 99
virB11-2 YP_005775728.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-148 99
cag-alfa AAF80196.1 Cag-alfa Virulence cag PAI Protein 7e-149 99
HP0525 BAD13777.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-148 99
virB11_1 NP_223192.1 cag island protein, DNA transfer protein Virulence cag PAI Protein 2e-148 99
HP0525 AAR03888.1 VirB11-like protein Virulence cag PAI Protein 7e-149 99
HP0525 BAD13804.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-148 99
HP0525 NP_207321.1 virB11-like protein Virulence cag PAI Protein 9e-149 99
HP0525 AAR03948.1 VirB11-like protein Virulence cag PAI Protein 7e-149 99
HP0525 BAD14050.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-148 99
virB11-4 YP_003728739.1 cag pathogenicity island protein alpha Virulence cag PAI Protein 9e-149 99
virB11 AGC69807.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-149 99
HP0525 BAD13831.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-148 99
HP0525 BAD13968.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-147 99
HP0525 BAD13941.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-148 99
virB11-2 YP_005777269.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-147 99
HP0525 AAR03917.1 VirB11-like protein Virulence cag PAI Protein 1e-148 99
HP0525 BAD13913.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-147 99
virB11-2 YP_005774544.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-148 99
HP0525 AAR03859.1 VirB11-like protein Virulence cag PAI Protein 1e-148 99
HP0525 BAD14024.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-148 99
virB11-2 YP_005779065.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-148 99
HP0525 BAD13858.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-147 98

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPLT_02600 YP_005772664.1 cag pathogenicity island protein alpha VFG0285 Protein 4e-149 99