Gene Information

Name : HPLT_02590 (HPLT_02590)
Accession : YP_005772662.1
Strain : Helicobacter pylori Lithuania75
Genome accession: NC_017362
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein gamma
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 508650 - 509159 bp
Length : 510 bp
Strand : +
Note : -

DNA sequence : 
TTGTTTGGGAAATGGATTGGTCTGACTTTATTTCTTAATTCTTTAGCCTATCCATGCCAAAAAATAACCATCAGTTTCAA
GCAATACGAGAATCTGATTCAAATCCATCAAAAAGGTTGCGACAATGAAGTGGTGTGCAGAACACTCATTTCTATCGCTT
TATTAGAAAGTTCTTTGGGCTTGAACAACAAGCGTGAAATTTCCACAAAAGACACTTCCTATTCCATGTTTCACATCACC
TTAAACACCGCTAAAAAATTCTATCCTACCTATTCTAAAACGCTCCTCAAGTTCAAATTGCTCAATGATGTGGGTTTTGC
GATCCAATTAGCCAAACAAATTTTAAAAGAAAATTTTGACTACTACAAACAAAAATATCCCAACAAAAGCGTGTATCAAT
TAGTAGAAATGGCAATAGGTGCTTACAATGGGGGAATGAAACACAACCCTAATGGCGCTTATGTGAAGAAATTCCGTTGC
ATCTATTCTCAAGTGCGATATAACGAGTAG

Protein sequence : 
MFGKWIGLTLFLNSLAYPCQKITISFKQYENLIQIHQKGCDNEVVCRTLISIALLESSLGLNNKREISTKDTSYSMFHIT
LNTAKKFYPTYSKTLLKFKLLNDVGFAIQLAKQILKENFDYYKQKYPNKSVYQLVEMAIGAYNGGMKHNPNGAYVKKFRC
IYSQVRYNE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cag4 AGC69794.1 cag pathogenicity island protein 4 Virulence cag PAI Protein 6e-74 98
cag4 YP_003728743.1 cag pathogenicity island protein gamma Virulence cag PAI Protein 8e-74 98
cag4 AAR03855.1 Cag4 Virulence cag PAI Protein 3e-74 98
HP0523 BAD14022.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-74 97
HP0523 BAD13966.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-54 96
HP0523 NP_207319.1 cag pathogenicity island protein (cag4) Virulence cag PAI Protein 1e-71 95
HP0523 BAD13994.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-72 95
cag4 AAR03946.1 Cag4 Virulence cag PAI Protein 2e-72 95
cag-gamma AAF80194.1 Cag-gamma Virulence cag PAI Protein 2e-72 95
cag4 AAR03886.1 Cag4 Virulence cag PAI Protein 4e-67 94
cag4 AAR03915.1 Cag4 Virulence cag PAI Protein 3e-72 94
HP0523 BAD13939.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-70 93
HP0523 BAD14048.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-70 93
HP0523 BAD13802.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-71 93
cag4 YP_005779067.1 cag island protein Virulence cag PAI Protein 4e-70 93
cag4 YP_005777267.1 cag island protein Virulence cag PAI Protein 3e-70 93
HP0523 BAD13775.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-70 93
cag4 YP_005774546.1 cag island protein Virulence cag PAI Protein 1e-70 93
HP0523 BAD13911.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-70 92
orf9 NP_223190.1 cag island protein Virulence cag PAI Protein 3e-65 92
HP0523 BAD13829.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-69 92
HP0523 BAD13884.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-70 92
HP0523 BAD13856.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-69 90
cag4 YP_005775726.1 cag island protein Virulence cag PAI Protein 1e-68 90

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPLT_02590 YP_005772662.1 cag pathogenicity island protein gamma VFG0283 Protein 4e-72 95