|
Name : HPLT_02585 (HPLT_02585) Accession : YP_005772661.1 Strain : Helicobacter pylori Lithuania75 Genome accession: NC_017362 Putative virulence/resistance : Virulence Product : cag pathogenicity island protein 3 Function : - COG functional category : - COG ID : - EC number : - Position : 507195 - 508640 bp Length : 1446 bp Strand : + Note : - DNA sequence : ATGTTTAGAAAACTAGCAACCGCTGTATCGCTCATAGGCTTACTAACCTCTAATACTCTTTATGCTAAAGAAATAAGTGA AGCCGATAAGGTTATTAAAGCCACTAAAGAAACTAAAGAGACCAAGAAAGAAGCTAAACGACTCAAAAAAGAAGCTAAAC AGCACCAACAAATCCCTGATCACAAGAAACCTCAATATGCCTCTGTTGATGACACAAAAACTCAAGCGCTTTTTGATATA TACGACACCTTGAATGTGAATGACAAAAGCTTTGGGGATTGGTTTGGTAATAGCGCTTTGAAAGACAAAACCTATCTCTA CGCTATGGATCTATTGGATTACAACAACTATTTATCCATAGAAAACCCCATTATCAAAACAAGAGCAATGGGGACTTATG CGGATCTCATCATCATCACAGGTTCGTTAGAACAAGTCAATGGGTATTACAACATTCTAAAAGCGCTCAACAAACGAAAC GCTAAGTTTGTGTTAAAAATCAATGAGAACATGCCTTACGCTCAAGCGACTTTTTTGAGGGTGCCAAAAAGAAGCGATCC TAATGCCCACACGCTTGATAAGGGAGCGGCAATTGATGAGAACAAGCTTTTTGAACAACAAAAACGTGCGTATTTCAACT ACGCCAACGATGTGATCTGCAGACCCGATGATGAAGTGTGTTCGCCCCTAAGAGATGAGATGGTCGCTATGCCCACTAGC GATAGCGTTACTCAAAAACCCAATATCATTGCTCCTTATAGCTTGTATAGACTAAAAGAGACAAATAACGCCAATGAGGC CCAACCATCACCTTATGCCACTCAAACCGCTCCTGAAAACAGCAAAGAGAAGCTCATAGAAGAGCTAATCGCTAATTCCC AACTCATAGCCAATGAAGAAGAGAGGGAAAAGAAACTCTTAGCAGAAAAAGAAAAACAAGAGGCTGAATTGGCTAAATAC AAGCTCAAAGACTTAGAAAATCAAAAGAAACTAAAAGCTTTAGAAGCAGAGTTGAAAAAGAAAAATGCTAAGAAACCTAG AGTAGTGGAAGTGCCTATTTCCCCTAAAACAAGTAACTCTGATGAAACAATGAGAGTTGTCAAAGAAAAAGAAAACTACA ATGGGTTATTAGTGGATAAAGAGACCACGATCAAAAGGAGCTATGAGGGGACTTTGATCAGCGAAAATTCTTACAACAAA AAATCGCCCATCAACATTAACGACTTGAGGAGCTTAGAAGAAGAAATCAAAAGCTACTATATCAAGTCTAACGGCTTGTG TTACGCTAATGGCATCAGTCTCTATGCAAGAATCAAAAACGACCCCTATAAAGAGGGAATGCTGTGTGGTTATGAGAGCG TTCAAAATCTGCTATCACCTCTAAAGGACAAGCTCAAATACGACAAGCAAAAGTTACAAAAAGCGTTACTGAAAGATTCA AAGTAA Protein sequence : MFRKLATAVSLIGLLTSNTLYAKEISEADKVIKATKETKETKKEAKRLKKEAKQHQQIPDHKKPQYASVDDTKTQALFDI YDTLNVNDKSFGDWFGNSALKDKTYLYAMDLLDYNNYLSIENPIIKTRAMGTYADLIIITGSLEQVNGYYNILKALNKRN AKFVLKINENMPYAQATFLRVPKRSDPNAHTLDKGAAIDENKLFEQQKRAYFNYANDVICRPDDEVCSPLRDEMVAMPTS DSVTQKPNIIAPYSLYRLKETNNANEAQPSPYATQTAPENSKEKLIEELIANSQLIANEEEREKKLLAEKEKQEAELAKY KLKDLENQKKLKALEAELKKKNAKKPRVVEVPISPKTSNSDETMRVVKEKENYNGLLVDKETTIKRSYEGTLISENSYNK KSPININDLRSLEEEIKSYYIKSNGLCYANGISLYARIKNDPYKEGMLCGYESVQNLLSPLKDKLKYDKQKLQKALLKDS K |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| HP0522 | BAD14021.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 6e-168 | 99 |
| cag3 | AAR03854.1 | Cag3 | Virulence | cag PAI | Protein | 2e-168 | 99 |
| cag3 | AGC69793.1 | cag pathogenicity island protein 3 | Virulence | cag PAI | Protein | 6e-167 | 98 |
| cag3 | YP_003728744.1 | cag pathogenicity island protein delta | Virulence | cag PAI | Protein | 8e-167 | 98 |
| cag3 | AAR03885.1 | Cag3 | Virulence | cag PAI | Protein | 7e-165 | 98 |
| HP0522 | BAD13910.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 1e-166 | 97 |
| cag3 | AAR03914.1 | Cag3 | Virulence | cag PAI | Protein | 1e-165 | 97 |
| cag-delta | AAF80193.1 | Cag-delta | Virulence | cag PAI | Protein | 6e-167 | 97 |
| HP0522 | BAD13938.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 4e-167 | 97 |
| HP0522 | BAD13828.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 4e-166 | 97 |
| HP0522 | NP_207318.1 | cag pathogenicity island protein (cag3) | Virulence | cag PAI | Protein | 2e-166 | 97 |
| HP0522 | BAD14047.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 1e-166 | 97 |
| cag3 | AAR03945.1 | Cag3 | Virulence | cag PAI | Protein | 8e-167 | 97 |
| HP0521 | BAD13993.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 4e-165 | 97 |
| HP0521 | BAD13965.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 8e-165 | 97 |
| cag3 | YP_005775725.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 5e-165 | 96 |
| HP0522 | BAD13855.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 4e-165 | 96 |
| cag3 | YP_005779068.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 1e-165 | 96 |
| cag3 | YP_005774547.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 6e-166 | 96 |
| HP0522 | BAD13774.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 7e-166 | 96 |
| cag3 | YP_005777266.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 5e-166 | 96 |
| HP0522 | BAD13883.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 3e-166 | 96 |
| HP0522 | BAD13801.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 2e-166 | 96 |
| orf8 | NP_223189.1 | cag island protein | Virulence | cag PAI | Protein | 1e-163 | 94 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| HPLT_02585 | YP_005772661.1 | cag pathogenicity island protein 3 | VFG0282 | Protein | 1e-166 | 97 |
