|
Name : HPLT_08075 (HPLT_08075) Accession : YP_005773701.1 Strain : Helicobacter pylori Lithuania75 Genome accession: NC_017362 Putative virulence/resistance : Unknown Product : outer membrane protein Function : - COG functional category : - COG ID : - EC number : - Position : 1602882 - 1603697 bp Length : 816 bp Strand : + Note : COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen DNA sequence : ATGAATGCATTCAAGCGTATTATTAGTGTGGGGGTAATTGCTTTAGGTTTGTTTAACCTTTTAGACGCCAAACACCACAA AGAAAAAAAAGAAAACCACAAAATCACTCGTGAGCTTAAAGTGGGCGCTAACCCTGTGCCGCATGCGCAAATCTTGCAAT CAGTCGTGGACGATTTGAAAGAGAAAGGGATCAAATTAGTGATCGTGTCTTTTACGGATTATGTGTTGCCTAATTTAGCG CTCAATGACGGCTCTTTAGACGCGAATTACTTCCAGCACCGCCCTTATTTGGATCGGTTTAATTTGGACAGAAAAATGCA CCTTGTTGGTTTGGCCAATATCCATGTGGAGCCTTTAAGATTTTATTCTCAAAAAATCACAGACATTAAAAACCTTAAAA AAGGCTCAGTGATTGCCGTGCCAAATGATCCGGCCAATCAAGGCAGGGCGTTGATTTTACTCCATAAACAAGGCCTTATC GCTCTTAAAGACCCAAGCAATCTATACGCTACGGAGTTTGATATTGTCAAAAATCCTTACAACATCAAAATCAAGCCTTT AGAAGCCGCATTATTGCCTAAAGTTTTAGGGGATGTGGATGGGGCTATTGTAACAGGGAATTACGCCTTGCAAGCAAAAC TCACTGGAGCCTTATTTTCAGAAGACAAGGACTCGCCTTATGCCAATCTAATAGCCGCTCGTGAGGATAACGCGCAAGAT GAAGCCATAAAAGCGTTGATTGAAGCTTTGCAGAGTGAAAAGACCAGGAAATTTATTTTGGATACCTATAAGGGAGCGAT TATCCCGGCTTTTTAA Protein sequence : MNAFKRIISVGVIALGLFNLLDAKHHKEKKENHKITRELKVGANPVPHAQILQSVVDDLKEKGIKLVIVSFTDYVLPNLA LNDGSLDANYFQHRPYLDRFNLDRKMHLVGLANIHVEPLRFYSQKITDIKNLKKGSVIAVPNDPANQGRALILLHKQGLI ALKDPSNLYATEFDIVKNPYNIKIKPLEAALLPKVLGDVDGAIVTGNYALQAKLTGALFSEDKDSPYANLIAAREDNAQD EAIKALIEALQSEKTRKFILDTYKGAIIPAF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SAAV_0786 | YP_003281709.1 | ABC transporter substrate-binding protein | Not tested | SaPIAv | Protein | 5e-35 | 41 |
