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Name : HPSA_04645 (HPSA_04645) Accession : YP_005771518.1 Strain : Helicobacter pylori SouthAfrica7 Genome accession: NC_017361 Putative virulence/resistance : Virulence Product : hypothetical protein Function : - COG functional category : - COG ID : - EC number : - Position : 954212 - 956122 bp Length : 1911 bp Strand : - Note : COG3843 Type IV secretory pathway, VirD2 components (relaxase) DNA sequence : ATGGCGTTAGAAAAAAGTTATAGTAAAGATTTGGAAAGCGATGAGCTTTTTGATTATGAGGTCATCAAGCCCAAAAAGAC GCTTAAGATACAATACACTTATGCTAAACGCTATTATAAAGAAGTAGAAAAATTTGCTAAAAATTTAACCCAACTTATAC AAGAAGAATCTATGCGTTTAAGAGAGCCGCAAAAACAAGTGGTCATCAAAAACATAGGCAATATGACACGCTTGCATTCA AAAAGGGCGATGGATTATATCGCTAAACATGGTGAGCTAGTGAGAGATGAATTTTTTAGTGGAGTTAATTATAATGATAT AGCAGAGCAATGGAATGAGCAATTTGAAAAATTATTAGAAAATAAGAGTCGTGTTAAAAATTGCGCTTTACATCTAGTGT TTAGCATTGATGAAAATTGTAATGAAAAAAACTTAAAAGCTTTGGAATTAAGCGCGTATCAAACACTCACTAACACGCTA GGTTATGATTACCCTTTCATAATGAAACTCCATACACACCAAAACAATCCGCATGTGCATGTGATTATCAACAAAACTAA CAAAATTACCAATAAGCAACTACGCTTTAATTCTAAAGATAGCTGTAAAGAGTTTTACCACACACTAAGAGAAACATTTA AAGATTATTTATTTGCTAACTCAAAAGGCGAATTGCAATATTCTAACACGCCCAATATTCATAAGGCAATTAAAGACATA GAAACAGAGTTAGATACGCTAGAAACACAGGCTAGAAACAATAAGAGTTTTAGGCATGAAAACTATTTTTATAAAGTTTT GGGCAGCGCGACTTCTCAAATAGAAAGCTTGAAAAAAAGAGAAAATGCCCTATCTGATCATTTAGATAGTCTAAAAAGTT TATTAGAAAAAACACATTGGGAAAAAGAAAAATTCACGCCTCCAACAAATGAAAAAGAATTTAACCGACAACTTAAAGAA ATAAAATGGTTAAATAAAGAATCTTTAACCCCTAAAAACACTTATAAAAAAATTCAAAAATTAGCTGTCTGTAAAAGCCC TTTAATAAAAGATTATCTTTATACCACCAAAAAACTTTTTGCCACACAAAAAAAGATTATAGATTTAGAAAAAGATTATA AAGATTTAAAAGTCTTAAAGGAAGAATTTAGCAAAGATTTAGAAGCTGATTTATTCCATTCAAAAAAACGCTTTGAGCTT TACACTAAACTAAAAAGCATGAGCAAAGTTTTCACAAGTAAAAACATTGTTAAAAATTTAGAAAAAATTGCTTTAGATTT TAAAAGCGATAGACATAGTATTTCGCAAAGAGCTTTTGAATTTTTTAGGTATATGAATTATCAAAATTTAAGCTTGACTG ATAAAGGCAATATGTTTTTAGTGGCTAAGTTTTTTAAAGATAGTGCTTTACTTGTTAATATCGCTAGGTTTGAAATGAAA AAGATAGATGATAATATTAGAAATTCTAGCCCACAAGACAATTTATTAGACAAACAAGTTTGGCTCAATCTTTTAAAACA TTTAAAGAGACTTGAAGAGGAAAATTATTGTTTTGCTAAGAAACGAAAAGAATTCTTGGAAACTAGAGCTATAGAGCTAT CAAAAGATTTAAAATTTTTAACGCAGGCTAATGAAAATGATTTGCCCATTTATGAAAGAGGGCAAAAGGATAAAATCATT AAACGCTGTGAAAAATCGCTTAACTTTTTAAAGAAAGAATTGCAATGCTTTAAAACCTTATCAAAAAGTGCAAGTATAGC TTTAGAAAACTTGCAAAATAACCATCAAACCACAGCCATTGCACAAGACACACAAGAAAATACAAACGCACTCAAAAATG CCACTCAAGATTTTAACAAAACCACCAATGAACCCATAAACCCTAACAATAACTATGAAATGGATTTTTAA Protein sequence : MALEKSYSKDLESDELFDYEVIKPKKTLKIQYTYAKRYYKEVEKFAKNLTQLIQEESMRLREPQKQVVIKNIGNMTRLHS KRAMDYIAKHGELVRDEFFSGVNYNDIAEQWNEQFEKLLENKSRVKNCALHLVFSIDENCNEKNLKALELSAYQTLTNTL GYDYPFIMKLHTHQNNPHVHVIINKTNKITNKQLRFNSKDSCKEFYHTLRETFKDYLFANSKGELQYSNTPNIHKAIKDI ETELDTLETQARNNKSFRHENYFYKVLGSATSQIESLKKRENALSDHLDSLKSLLEKTHWEKEKFTPPTNEKEFNRQLKE IKWLNKESLTPKNTYKKIQKLAVCKSPLIKDYLYTTKKLFATQKKIIDLEKDYKDLKVLKEEFSKDLEADLFHSKKRFEL YTKLKSMSKVFTSKNIVKNLEKIALDFKSDRHSISQRAFEFFRYMNYQNLSLTDKGNMFLVAKFFKDSALLVNIARFEMK KIDDNIRNSSPQDNLLDKQVWLNLLKHLKRLEEENYCFAKKRKEFLETRAIELSKDLKFLTQANENDLPIYERGQKDKII KRCEKSLNFLKKELQCFKTLSKSASIALENLQNNHQTTAIAQDTQENTNALKNATQDFNKTTNEPINPNNNYEMDF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| virD2-1 | YP_002301087.1 | relaxase | Virulence | cag PAI | Protein | 0.0 | 92 |
