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Name : HPSA_04625 (HPSA_04625) Accession : YP_005771514.1 Strain : Helicobacter pylori SouthAfrica7 Genome accession: NC_017361 Putative virulence/resistance : Unknown Product : hypothetical protein Function : - COG functional category : - COG ID : - EC number : - Position : 943299 - 951707 bp Length : 8409 bp Strand : + Note : COG0827 Adenine-specific DNA methylase DNA sequence : ATGCAAAAAAAGAAAGCTAAAAACCCACAACCGAATTTATTTAGCATCTTAGATAATGGCGGTATTGCCATAAGCAATCC TGCTGAAGAATCAGACAAGGTCAATGCAATACAAGATCCACTCCATTATGTCGTGAAAACTCAAATCAATACAGCAAGCA TGATTTCTAGAAATCCTATTGAATGGGCGAGGTATTTAAGCTTTGAAAAACGAGTGTATAAGGATAATAGTAAAGAAGAT GTCAAGTTCTTTGCTAATGGTGGGATAAAAGAAAGCTCTCATGTTTATGAAGCGAATAAGGAAGGGTTTGAAAGGTGCAT AACTAAAAGATACGATCTGATTGATACCATCAGAAATAGAGAATTTCATTCAAGAGAAACTGAAATTCTAACCCACACAA ACAGCTTAGAAGAATTGAAAGAACAAGGTTTAGAAATCCAATTGACCCACCATAATGAAACGCATAAGAAAACCTTAGAA AATGGCAATGAAATCATTAAAGAATACGACTATCTTAAAGATATTTACCAAGAAGTAGAAAGGGAAACAAGAAATTACGG GGTAGTAAGGGAAATAGTCCCTAGTATGTCCAGTGATGAGCATTTTAAGCTCTATAACAAACTGCCTTTTGAATCAATAA ACAATGAAAACACCAAATTGAACACTAACGCCAATGAAGAAGTTAAAAAACTAGAATTTGAATTAGCTAAAGAAGTGCAT GCTTTAATCCTAGAGCAACAATTGCTTTCAGCAACAAATTATTATTCTTGGATAGATAAAGATGATTATGCGTCTTTTGC TTGGAAAATACATAGGCTTATCAATGAAAATAGACTCAAAGAAAATCATCTCAGTGCAGATAACGCTAATAAGATCAAGC AATTTTTCTTTAATAATGGTTTTATTTTAGGTTGGACTAAAGAAGAACAAAGCGCTATACAAGAAAACAGAGATTATTCT TTAAGAAGTGCTCTTTTAAGTTTAGAAGAAATCGCTCAAGCAAAAATTGAATTGCAAAAATACTATGAAAGCGTTTATCT TAATGGTGATGGGAATAAAAGAGAAATCAAACCTTTTAAAGAAATTTTAAGAGACATCAACAATTTTGAAAAAGCTTATA AAGAGCGTTATAATGAATTGGTAAGTTTGAATGAAGCAATCATTCAAGCTAAAGAGAGCAGTAATGAGCGACAAAATTCT AACGCAAATAACAATAACACTATTAACAATACAATAAAGCATAATACTTCTATTGGTAACAATATTGTTCAAAATAATGA TAATAATCATCTAAATTTAAGCATGGTTGATTTAGAATTAGAGCAACAAAATTTAGGGGAACCAAATGGAAAAGAAAGAA CAAATCGCGCAGATGAGCCGAGCAGAGCTAGAGCAGGAATTCCGCAAGAAATTCACCGCAGAAGCGAACATGGAGGACAG CAAGAGAGAGTGGAGCGATCGAGTGATGAAGAATTTTCACACCAAGACCCTAGTTTATTTATTGAGCCTAGAGAGCAGAG AGAAACAAGAGGAATTTATAGATCTAGCGACCAACAGGCAGTTTCAGAAAAACCCCATAGAGAGCGAGATAGATTACATG AACATGTATCTAGAGGAGATGGAGTATCAGCAAGAACAGATAGCAATGGGGCATCAAGTCAAGCAAGCCGAATGGAAAAT GGAGCAAGAAGCGAAGAAAAGGGGGATAATCCCCATAATGAGAGAGGAGTATCACAGACACCGCAATCCCCATCTCATCA ACAAAATAGCTCCAGAGATTTGGGGCTTTCTCTCTCTAGAGAACAGCCAGGACAGACTGGACGCTTACGCCTTTTTGATT ATGGACAGATGGGCTCATTATTTCCCACAGACCATGAAAACCAAGGATCACAGAACAATAGGGAGCTTGATAAAAGCAGT GATAGAGCAAACGAAAATGGAGACAGAAGCCCTAGACAGAATGGAAGCGCAAATCAAGAGGGTGCAAGGGGTGAGCGATA TGGAATTGCTCAAGGAAGCTCAAATCAATCAATATTACCACCTACTCAAAGCCAATTATATCCTGCAGGACTCAGCGCAT CAAATGGACTTGGAAACCTTGAAAAAAACAGGGATCAAGAGAGAGGACTTTTATCAAATTTAGACAATTTAAAAGACTTG CTTAACGCTATTCAAAACAACACCATAGCGAGTGAGCTTGACTATAGATCTAGGCTCTTAGAAGCTATTCAAAACAACGA GCCTTTAAAAGACAGTATTGTAGGGACACAACTCCTTAAAGACCCTACGACTAAAGTCTTTTATGACAAATTCCAATTAA AAATCAGCTCCACAAAAATCTTAGAGATTTTAGAAAATCGCATTCAAAAATCCATTGAAACAACGAATGAAACCTTAAAC GCATTCAATGCACTGGATAGTCAAGCCATTGATAAAAACGCTATCTCTAATAGCGTAGGATTAAATCCCACGCAAGAGAG TGAAATAACAGATAATAGCGTAGAGTTCAATAACGCTCAAGAGCAAGACACACAAGAAAACGCACAAACCACGCTAAAAC AAGAAACGCAAGAGCAAGAAACACCAACCACGCCATCCATCGCCCTTAATCCTAAAATAGATTTTAAACCGAGCGAAGAA GTTTTAATTAAGGGAGCTAAAAACCGCTATAAGGCTAACATTAAAGCCATTGAACTCTTAAAAGAATTGCAAGCCAAACA AGAGATCTTAAAAGGCGATTATCACGCCACTCAAGAAGAGCAAGAAATCCTAGCGCAATTTAGCGGATGGGGTGGGCTAG AAAGCTACTTTAAAAAGGATCAACACCCTGAAGAATTTAAAGAATTAAACGCCTTACTCACTAAAGATGAATTCAGAAGA GCTTATTCAAGCACAAGAGACGCTTACTACACCCCTAAATTAGTTATTGATAGCATTTATCAGGCTTTAGATCAATTAGG GTTTAATAACGACAACCATCAAAAAGAAATCTTTGAACCCAGTTTAGGCACAGGTAAATTCATCGCTCATGCGCCAAGCG ATAAGAATTACCGCTTTATCGGCACAGAATTAGATCCTATTAGCGCTAATATTTCTCAATTCCTTTACCCTAATCAAGTC ATCCAAAACACCGCTTTAGAAAACCACCATTTTTATCAAGAATACGATGCGTTTGTGGGCATTCCTCCTTATGGCAATCA TAAAATCTATAGCTCCAATGACAAAGAATTGAGTAACGAGAGCGTTCATAATTACTTTTTAGGGAAAGCTATCAAAGAAT TGAAAGATGATGGCATAGGGGCGTTTGTGGTGAGTTCTTGGTTTATGGATGGTAAAAACCCTAAAACGAGGGAATACATC GTGCAAAACGCCACTTTTTTAGGAGCGATAAGATTGCCTAATAGCGTGTTTAAAGCAACAGGCACTGAAGTGAGTAGCGA CATTGTGTTTTTTAAAAAAGGCGTTGATGAAGCAATCCATCAAAGCTTCACTAAAGCTATGCCTTATTATGGCAAGATCA TTGATAGCTTGGATGATGACACCCTTTTTGCCTTGCAAAACAACCGCTTTGATAGTTTTATCCCTAGCGACCAACTTAAG ATCGTCAATGCGATTGCAAGCCATTTTGGTTTCAAACAAGAAAAATTGCAACGTTGGTATGAAAAAATAGACACCGCCAA CTTTGGCTACAGCGAACAAGACTATAAGATCATCAAAGACTTCATGGATAGAGTTGGCGAGAACAATATCAATCTCAACG AACAAACCCTAAATGAATACTTTATCAACCACCCTGAAAACATTCTAGGGCATTTGAGTTTGGAAAAAACCCGCTATAGC TTTGAAATAAATGGCGAACAAATTTATAAATACGAATTGCAAGCCTTAGAGAATAAAAGCTTAGATTTATCCCAAGCTCT TAGCCAAGCGATAGAAAAATTGCCTAAAGATGTCTATCAATACCATAAGACTACCCTTAAAACAGACGCTCTCATCATTG ATGCAAATAACGAACGCTATCAAGAAGTTCAAAAGCTTATCAAGAATTTAGCAAGGGGAGAATTAGTCAAGTGGGATAAT CTTTATTACCAACTAGAACAAAATAATGAAATGGGTATTTTTTTAAGACCCACTAAAATCAACTCTAAAGCCCAAGATTT ACGAATAAAAGCCTATTTTAAAATTAAAGACGCTTTGAATGATTTAACGAGTGCGGAATTAAACCCCTTAAGCTCTGATT TAGAGCTAGAAAGTAAAAGAGCCAAGCTCAATCTTGTTTATGATGAATTTGTCAAGAAATTTGGCTATCTCAATGAGAAT AGAAACCGCAAGGACATCAAACAAGATTTGTATGGTGCTAAAATCTTAGGATTAGAGAAAGACTTTGAAAAAGAAATCAC CGCTAGAAGTGCTAAAATGCAAAACATAGAACCAAGGCAAGCTCAAGCTAAAAAAGCTCAAATCTTTTTTGAAAGGACTT TAAACCCTAAAAAAGAATTTATCATTACTAACGCTAAAGAGGCATTAATTACTAGCATCAATCAAAAAGGGGGTTTGGAC TTGCATTTTATTAGGGATCATTTTAAAACCCAAAGCTTAGAAACCACGATTAAAGAACTTTTAGAGCAAAAACTGATTTA TAAAGACCACAAGGATAATGGCGACTACATTTTAGCGAACGATTATTTGAGCGGTAATGTGAAAAGAAAGCTCAAAGAAG TGAAAGACGCCATCAATCAAGGCGTGGAGAGATTAGAGGTTAATTTGCAAGATTTAGAGCTGATTATCCCTAAAGATTTG AAAGCCACTGCAATCATGGCTAATATCAACAGCCCTTGGATACCCACCCAGTATTTAGAAGAGTTTTTAATAGAATTGAG CGCTAACCATTATGAAAAGCAATACGGCGATAAAATGACAGATTACCAACTAGGCAACCTCAAAGAAGACATCAAAGTAG AACACTTAAACGGCGCTTATGAAGTTTTTGCTAGAAGCAATGAATTAAACGAGCTTTATGGCATCAGGCATAAAGACAGA GCGCATTCTTATAAAGCGCCTTTTGAAAGCCTTTTAAATAAAGTCTTAAACAACAAGGATTTGAGCGTTAAATACGCCCA AGTTGATCCTAATGATCCTAAAAAAGAAATCTTTATCACTGATGAAGAGCAAAGCAATCTTGCCAGACAAAAAGCAGAAG AATTGAAAGAAGCTTTTAAAGACTGGATTTATAAGGATTATACAAGAAGAACCTATTTAGAGCAAATCTATAATGACACT TTCAATAACTCTGTTTTAAAAACCTATGATGGCTCGCAATTAGAACTAGAGGGCTTTAATCAGTATATCAGCTTACGACC CCACCAAAAGAACGCTATTTTTAGAACGATCCAAGATAGGGCGGTGTGTTTAGACCATCAGGTTGGAGCAGGCAAGACTT TGTGCGCTATAGCCAGTTGCATGGAACAAAAACGCATGGGATTAGTGAATAAAACGCTCATTGCCGTGCCTAACCATTTA ACCAAGCAATGGGGCGATGAATTTTATAAGGCTTACCCTAACGCTAATGTGTTGGTTGTTGATAGCAAGGACATCACTGA AAAAGAAAGAGAGCTTTTATATAATCAAATCGCTAACAACAATTATGACGCTGTGATTATCGCGCACACCCATTTGGAAT TGTTGTCTAACCCTAGAGAAATCATAGAAGAATTGAAAGAAGAAGAGCTAGTGAATGCCGAAAAAAACTTTGAAAGGCAA GAACTGGCCTACAAAAATAACCCCAGAGAAACTAAAAAACCCAATGAAAGAGCCTTTAAAAACAAGCTAGATAAAATCCG CAATAAATACGATGCGATTTTAGAAAAACAAGGCTCTTATATTGATATTGGTCAAATGGGGATTGATAATTTGATTGTGG ATGAAGCCCATTTATTCAAAAATCTAGCCTTTGAAACTTCTATGGAAAAAATTGCAGGGCTTGGCAACCAACAAGGCTCT AATCGTGCTAGAGATTTGTTTATTAAAACACGCTACTTGCATCAAAACGATAAAAAGATCATGTTTTTAACCGGCACGCC TATAGCTAATTCCTTGAGTGAAATGTATCACTTGCAACGCTACCTAACCCCTGATGTCTTAAAAGAAAGAGGGTTAGAAT TCTTTGATGATTGGGCTAAGACTTATGGGGAAGTGGTGAATGATTTTGAATTAGACACTTCCGCTCAAAGTTATAAAATG GTTAATCGCTTTTCTAAATTTAGCGATGTGCAAGGCTTAAGCACCATGTATAGAGCCTTTGCGGATATTGTCTCCAATGA TGATATTTTAAAACATAACCCCCACTTTGTGCCTAAAGTGTATGGGGATAAACCTATCAATGTGGTGGTGAAAAGAAGCG AAGAAGTGGCTCAATTCATTGGCGTTGCTGATGAAAATGGTAAATATAATGAAGGCTCTATCATTGACAGGATGCAAAAA TGCGAGGGCAAGAAAAGCAAAAAAGGGCAAGACAATATCCTTTCTTGCACCACAGACGCTAGAAAAGTGGCTTTGGATTA CCGCTTGATTGACCCTAACGCTAAAGTAGAAAAAGAATTTTCTAAAAGCTATGCTATGGCAAAAAATATCTATGAGAATT ATTTAGAAACTAATGCTACTAAAGGCACACAACTTGGTTTCATAGGGCTATCCACACCCAAAACCCATAGCCAAAAAGTG AGTTTAGAAGCGTTAGATAACGCTCATGAGATAGAAAACAAAAATCCCCTAGATGAAGCTCAAGAGCTTTTAGAGAGCTT GTCTAGTTATGATGAAAATGGCAATCTTATCGCTCCTAGCAAGAAAGAATTAGAAAACGAACTCAAAGAGAAAGAGGCTA AAAACATCAATTTAGATGAAGAGCTAGCTAAAGGCTGTAAGTTTGATGTTTATAGCGATGTTTTAAGGCATTTAGTCCAA ATGGGTATCCCACAAAATGAAATCGCTTTCATCCATGACGCTAAAACCGAAGAGCAAAAGCAGGATTTGTTTAAAAAGCT CAATCGTGGCGAAGTCAGGGTCTTATTGGGCAGTCCTGCTAAAATGGGCGTAGGCACTAATGTGCAAGCTAGATTAGTCG CTATGCATGAATTAGATTGCCCATGGAGGCCTGATGAATTGTTGCAAATGGAAGGGCGTGGGATAAGACAAGGCAATATT TTACACCAAAATGACCCTGAAAATTTTAGAATGAAAATCTATCGCTACGCCACTGAAAAGACTTATGATAGCCGTATGTG GCAAATCATAGAAACTAAATCTAAAGGCATAGAGCAATTTAGAAACGCACACAAATTAGGTTTGAATGAATTAGAAGACT TCACTATGGGAAGTTCTAATGCGAGCGAGATGAAAGCAGAAGCGACAGGCAATCCGTTGATTATTGAAGAAGTCAAATTG AGGGCTGAAATCAAAAGCGAAGAAGCAAAATACAAAGCTTTCAATAAAGAGCATTACTTCAATGAAGAGAATTTGAAAAA CAACGCTTCTAAACTTGATTTTTTACACAAGGAATTAAAAGATCTAGAAACGCTTCAAAGCTCTGTAATGATCCCCACTC ATACAGAGATCAAGCTCTATGATTTGAAAAATGAAGAGAGTAAGGATTATGAGCTTATCAAAGTTAAAGAAGTAGAGCCT TTAAAAGAAAACGCCTCTATGAGTGAAGAATTAACGCACAAGAAACTCAAAGAACAAAACAAGCAAATAGCCGAACAAAA TAAAGAAAAACTAGACGCTATTAAAAAGCAATTTGCAAGCAATTTGAACGACTTGTTTTTCAATGAAGAAAGAGATTGTA AGCTTTTAGAATACAAGGGCTTTGTGGTGAATGCTTATAAAACTAAGTATCAAGTGGAGTTTAGTTTAAGCCCTAAAGAC AATCCAAATATTGCCTATAGCCCTAGCAATATGGTTTATAAAAACGATACGGGAAACATGTTTAGCTCTTATAATTTCTG CGGTGAGATTAAATTTGATGGGTTTTTAAAGAGATTGGATAACGCTATCACTAAACTCCCTGAAAAAATCAAGGAATTAG AAAACTCCATTGAAACCACTCAAGAAAATATCGTTAAATACACAAGATTAGTGGAGCAAAAACCTCCTTACCCACGACTA GAATACTTACAATCTTTAAAACTGGATCATAAAACTCTAATAGATGACTTAGCTAAAATGGGCAGAGACAGAGATTATAA ACCTGTGTTCAACCCTAAATCTAAAGAAGTCTTAGAGAAAATGAACGCTGAAAAAAGAGCGAGTTTAGAGAATGAGGGCA TAACAGAAGAGATAAAAGAACAAGCCAACCAAGAAGCGCATAGACCAATGAAAAAAGCGGCTAATGATGATTACGACATG GGGATGTGA Protein sequence : MQKKKAKNPQPNLFSILDNGGIAISNPAEESDKVNAIQDPLHYVVKTQINTASMISRNPIEWARYLSFEKRVYKDNSKED VKFFANGGIKESSHVYEANKEGFERCITKRYDLIDTIRNREFHSRETEILTHTNSLEELKEQGLEIQLTHHNETHKKTLE NGNEIIKEYDYLKDIYQEVERETRNYGVVREIVPSMSSDEHFKLYNKLPFESINNENTKLNTNANEEVKKLEFELAKEVH ALILEQQLLSATNYYSWIDKDDYASFAWKIHRLINENRLKENHLSADNANKIKQFFFNNGFILGWTKEEQSAIQENRDYS LRSALLSLEEIAQAKIELQKYYESVYLNGDGNKREIKPFKEILRDINNFEKAYKERYNELVSLNEAIIQAKESSNERQNS NANNNNTINNTIKHNTSIGNNIVQNNDNNHLNLSMVDLELEQQNLGEPNGKERTNRADEPSRARAGIPQEIHRRSEHGGQ QERVERSSDEEFSHQDPSLFIEPREQRETRGIYRSSDQQAVSEKPHRERDRLHEHVSRGDGVSARTDSNGASSQASRMEN GARSEEKGDNPHNERGVSQTPQSPSHQQNSSRDLGLSLSREQPGQTGRLRLFDYGQMGSLFPTDHENQGSQNNRELDKSS DRANENGDRSPRQNGSANQEGARGERYGIAQGSSNQSILPPTQSQLYPAGLSASNGLGNLEKNRDQERGLLSNLDNLKDL LNAIQNNTIASELDYRSRLLEAIQNNEPLKDSIVGTQLLKDPTTKVFYDKFQLKISSTKILEILENRIQKSIETTNETLN AFNALDSQAIDKNAISNSVGLNPTQESEITDNSVEFNNAQEQDTQENAQTTLKQETQEQETPTTPSIALNPKIDFKPSEE VLIKGAKNRYKANIKAIELLKELQAKQEILKGDYHATQEEQEILAQFSGWGGLESYFKKDQHPEEFKELNALLTKDEFRR AYSSTRDAYYTPKLVIDSIYQALDQLGFNNDNHQKEIFEPSLGTGKFIAHAPSDKNYRFIGTELDPISANISQFLYPNQV IQNTALENHHFYQEYDAFVGIPPYGNHKIYSSNDKELSNESVHNYFLGKAIKELKDDGIGAFVVSSWFMDGKNPKTREYI VQNATFLGAIRLPNSVFKATGTEVSSDIVFFKKGVDEAIHQSFTKAMPYYGKIIDSLDDDTLFALQNNRFDSFIPSDQLK IVNAIASHFGFKQEKLQRWYEKIDTANFGYSEQDYKIIKDFMDRVGENNINLNEQTLNEYFINHPENILGHLSLEKTRYS FEINGEQIYKYELQALENKSLDLSQALSQAIEKLPKDVYQYHKTTLKTDALIIDANNERYQEVQKLIKNLARGELVKWDN LYYQLEQNNEMGIFLRPTKINSKAQDLRIKAYFKIKDALNDLTSAELNPLSSDLELESKRAKLNLVYDEFVKKFGYLNEN RNRKDIKQDLYGAKILGLEKDFEKEITARSAKMQNIEPRQAQAKKAQIFFERTLNPKKEFIITNAKEALITSINQKGGLD LHFIRDHFKTQSLETTIKELLEQKLIYKDHKDNGDYILANDYLSGNVKRKLKEVKDAINQGVERLEVNLQDLELIIPKDL KATAIMANINSPWIPTQYLEEFLIELSANHYEKQYGDKMTDYQLGNLKEDIKVEHLNGAYEVFARSNELNELYGIRHKDR AHSYKAPFESLLNKVLNNKDLSVKYAQVDPNDPKKEIFITDEEQSNLARQKAEELKEAFKDWIYKDYTRRTYLEQIYNDT FNNSVLKTYDGSQLELEGFNQYISLRPHQKNAIFRTIQDRAVCLDHQVGAGKTLCAIASCMEQKRMGLVNKTLIAVPNHL TKQWGDEFYKAYPNANVLVVDSKDITEKERELLYNQIANNNYDAVIIAHTHLELLSNPREIIEELKEEELVNAEKNFERQ ELAYKNNPRETKKPNERAFKNKLDKIRNKYDAILEKQGSYIDIGQMGIDNLIVDEAHLFKNLAFETSMEKIAGLGNQQGS NRARDLFIKTRYLHQNDKKIMFLTGTPIANSLSEMYHLQRYLTPDVLKERGLEFFDDWAKTYGEVVNDFELDTSAQSYKM VNRFSKFSDVQGLSTMYRAFADIVSNDDILKHNPHFVPKVYGDKPINVVVKRSEEVAQFIGVADENGKYNEGSIIDRMQK CEGKKSKKGQDNILSCTTDARKVALDYRLIDPNAKVEKEFSKSYAMAKNIYENYLETNATKGTQLGFIGLSTPKTHSQKV SLEALDNAHEIENKNPLDEAQELLESLSSYDENGNLIAPSKKELENELKEKEAKNINLDEELAKGCKFDVYSDVLRHLVQ MGIPQNEIAFIHDAKTEEQKQDLFKKLNRGEVRVLLGSPAKMGVGTNVQARLVAMHELDCPWRPDELLQMEGRGIRQGNI LHQNDPENFRMKIYRYATEKTYDSRMWQIIETKSKGIEQFRNAHKLGLNELEDFTMGSSNASEMKAEATGNPLIIEEVKL RAEIKSEEAKYKAFNKEHYFNEENLKNNASKLDFLHKELKDLETLQSSVMIPTHTEIKLYDLKNEESKDYELIKVKEVEP LKENASMSEELTHKKLKEQNKQIAEQNKEKLDAIKKQFASNLNDLFFNEERDCKLLEYKGFVVNAYKTKYQVEFSLSPKD NPNIAYSPSNMVYKNDTGNMFSSYNFCGEIKFDGFLKRLDNAITKLPEKIKELENSIETTQENIVKYTRLVEQKPPYPRL EYLQSLKLDHKTLIDDLAKMGRDRDYKPVFNPKSKEVLEKMNAEKRASLENEGITEEIKEQANQEAHRPMKKAANDDYDM GM |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| HPP12_0447 | YP_002301083.1 | DNA methylase | Not tested | cag PAI | Protein | 0.0 | 91 |
