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Name : ureB (HPSA_00370) Accession : YP_005770707.1 Strain : Helicobacter pylori SouthAfrica7 Genome accession: NC_017361 Putative virulence/resistance : Virulence Product : urease subunit beta Function : - COG functional category : - COG ID : - EC number : 3.5.1.5 Position : 73419 - 75128 bp Length : 1710 bp Strand : - Note : COG0804 Urea amidohydrolase (urease) alpha subunit DNA sequence : ATGAAAAAGATTAGCAGAAAAGAATACGTATCTATGTATGGCCCTACTACAGGCGACAAAGTGAGATTGGGCGATACAGA ACTGATTGCTGAAGTAGAACATGACTACACCATTTATGGCGAAGAACTTAAATTCGGCGGCGGTAAAACCCTAAGAGAAG GCATGAGCCAATCTAACAACCCCAGCAAAGAAGAACTGGATTTAATCATCACCAACGCTTTAATCGTGGATTACACCGGT ATTTATAAAGCGGATATTGGTATTAAAGACGGCAAAATCGCTGGCATTGGTAAAGGCGGTAACAAAGACATGCAAGATGG CGTTAAAAACAATCTTAGCGTAGGTCCTGCTACTGAAGCGCTAGCCGGTGAAGGTTTGATCGTAACGGCTGGTGGTATTG ACACACACATCCACTTCATTTCACCCCAACAAATCCCTACAGCTTTTGCAAGCGGTGTAACAACCATGATTGGTGGCGGA ACCGGTCCTGCTGATGGCACTAATGCGACTACTATCACTCCAGGTAGAAGAAATTTAAAATGGATGCTCAGAGCGGCTGA AGAGTATTCTATGAACTTAGGTTTCTTGGCTAAAGGTAACACTTCTAACGATGCGAGCTTAGCCGATCAAATTGAAGCCG GTGCGATTGGCTTTAAAATCCACGAAGACTGGGGCACCACTCCTTCTGCAATCAATCATGCGCTAGACGTTGCGGACAAA TACGATGTGCAAGTCGCTATCCACACAGACACTTTGAATGAAGCCGGTTGCGTAGAAGACACTATGGCTGCTATTGCCGG ACGCACTATGCACACTTTCCACACTGAAGGCGCTGGCGGCGGACACGCTCCTGATATTATTAAAGTGGCCGGTGAACACA ACATTCTACCCGCTTCCACTAACCCCACTATCCCTTTCACCGTGAATACAGAAGCCGAGCACATGGACATGCTCATGGTG TGTCACCACTTGGATAAAAGCATTAAAGAAGATGTCCAGTTCGCTGATTCAAGGATCCGCCCTCAAACCATTGCGGCTGA AGACACTTTGCATGACATGGGGATTTTCTCCATCACCAGTTCTGACTCTCAAGCGATGGGCCGTGTGGGTGAGGTTATCA CTAGAACTTGGCAAACAGCTGACAAAAACAAAAAAGAATTTGGCCGCTTGAAAGAAGAAAAAGGCGATAACGACAACTTC AGGATCAAACGCTACTTGTCTAAATACACCATTAACCCAGCAATCGCTCATGGGATTAGCGAGTATGTAGGTTCTGTGGA AGTGGGCAAAGTCGCTGACTTGGTATTATGGAGTCCAGCATTCTTTGGCGTGAAACCTAACATGATCATCAAAGGCGGAT TCATTGCGTTAAGTCAAATGGGTGATGCGAACGCTTCTATCCCTACTCCGCAACCGGTTTATTACAGAGAAATGTTTGCC CACCATGGTAAAGCTAAATACGATGCAAATATCACTTTTGTGTCTCAAGCGGCTTATGACAAAGGCATTAAAGAAGAGTT AGGGCTTGAAAGACAAGTATTACCGGTTAAAAATTGCAGAAATATCACTAAAAAAGATATGCAATTCAATGACACTACCG CTCACATTGAAGTCAATCCTGAAACCTACCATGTGTTCGTGGATGGCAAAGAAGTAACTTCTAAACCGGCTAATAAAGTG AGCTTAGCACAACTCTTTAGCATTTTCTAG Protein sequence : MKKISRKEYVSMYGPTTGDKVRLGDTELIAEVEHDYTIYGEELKFGGGKTLREGMSQSNNPSKEELDLIITNALIVDYTG IYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGG TGPADGTNATTITPGRRNLKWMLRAAEEYSMNLGFLAKGNTSNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADK YDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTNPTIPFTVNTEAEHMDMLMV CHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSSDSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNF RIKRYLSKYTINPAIAHGISEYVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFA HHGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCRNITKKDMQFNDTTAHIEVNPETYHVFVDGKEVTSKPANKV SLAQLFSIF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ureC | NP_286680.1 | urease subunit alpha | Virulence | TAI | Protein | 3e-157 | 62 |
| ureC | NP_287088.1 | urease subunit alpha | Not tested | TAI | Protein | 3e-157 | 62 |
| ureC | YP_005684266.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 3e-146 | 60 |
| ureC | YP_005682174.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 3e-146 | 60 |
| ureC | YP_003784325.1 | urease subunit alpha | Not tested | PiCp 7 | Protein | 3e-146 | 60 |
| ureC | YP_005686358.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 3e-146 | 60 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ureB | YP_005770707.1 | urease subunit beta | VFG0270 | Protein | 0.0 | 99 |
