Gene Information

Name : fliP (HPSA_03250)
Accession : YP_005771256.1
Strain : Helicobacter pylori SouthAfrica7
Genome accession: NC_017361
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 665291 - 666037 bp
Length : 747 bp
Strand : +
Note : COG1338 Flagellar biosynthesis pathway, component FliP

DNA sequence : 
TTGCGTTTTTTAAAAATCATTTTTTTAATATTTGCTCTTATTGGTCCTTTAATGAGCGCTGATAGCGCATTGCCTAGCGT
CAATCTCTCTTTAAACGCCCCCAATGATCCCAAGCAACTCGTAACCACCCTTAATGTCATCGCTTTACTCACGCTTTTAG
TGTTAGCCCCATCGTTGATTTTAGTGATGACGAGTTTCATCCGTTTGATCGTGGTGTTTTCTTTTTTAAGGACCGCTTTA
GGCACGCAACAAACCCCACCCACTCAAATTCTTGTCTCGCTCTCTTTAATATTGACTTTTTTCATCATGGAACCTAGCTT
GAAAAAGGCTTATGATACAGGGATCAAACCCTATATGGATAAAAAAATTTCTTACACCGAAGCGTTTGAAAAAAGTGCTC
TGCCTTTTAAGGAGTTTATGCTTAAAAACACACGAGAAAAGGATCTAGCCCTTTTTTTTAGGATTAGAAACCTGCCTAAC
CCCAAAACCCCTGATGATGTGAGCTTGAGCGTTTTAATCCCAGCGTTTATGATAAGCGAATTGAAAACAGCGTTTCAAAT
CGGCTTTTTACTCTACTTGCCTTTTTTGGTGATTGATATGGTCATCAGCTCTATTTTAATGGCGATGGGTATGATGATGC
TCCCGCCTGTAATGATTTCTTTACCCTTTAAAATTTTAGTGTTTATTTTAGTGGATGGGTTTAATTTATTGACTGAAAAT
TTAGTGGCGAGTTTTAAAATGGTGTAG

Protein sequence : 
MRFLKIIFLIFALIGPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFIRLIVVFSFLRTAL
GTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPN
PKTPDDVSLSVLIPAFMISELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTEN
LVASFKMV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 3e-26 46
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 4e-26 46
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 4e-26 46
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 2e-25 45
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 2e-25 45
escR AAC38369.1 EscR Virulence LEE Protein 8e-21 45
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 2e-21 45
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 2e-21 45
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 2e-21 45
escR AAK26700.1 EscR Virulence LEE Protein 2e-21 45
escR AAL57527.1 EscR Virulence LEE Protein 2e-21 45
escR CAC81847.1 EscR protein Virulence LEE II Protein 2e-21 45
escR CAI43889.1 EscR protein Virulence LEE Protein 2e-21 45
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 2e-21 45
escR AAC31528.1 L0049 Virulence LEE Protein 1e-21 45
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 2e-21 45
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 1e-21 45
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-22 45
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-22 45
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 6e-23 44
unnamed AAL06354.1 EscR Virulence LEE Protein 3e-21 43
lscR AAO18040.1 LscR Virulence TTSS locus Protein 3e-24 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_005771256.1 flagellar biosynthesis protein FliP VFG2338 Protein 2e-40 54
fliP YP_005771256.1 flagellar biosynthesis protein FliP VFG2494 Protein 3e-43 54
fliP YP_005771256.1 flagellar biosynthesis protein FliP VFG2016 Protein 4e-40 53
fliP YP_005771256.1 flagellar biosynthesis protein FliP VFG1259 Protein 4e-41 53
fliP YP_005771256.1 flagellar biosynthesis protein FliP VFG0519 Protein 2e-26 46
fliP YP_005771256.1 flagellar biosynthesis protein FliP VFG0827 Protein 8e-22 45
fliP YP_005771256.1 flagellar biosynthesis protein FliP VFG0715 Protein 4e-21 45
fliP YP_005771256.1 flagellar biosynthesis protein FliP VFG0188 Protein 1e-24 41
fliP YP_005771256.1 flagellar biosynthesis protein FliP VFG0044 Protein 5e-24 41
fliP YP_005771256.1 flagellar biosynthesis protein FliP VFG0394 Protein 4e-23 41