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Name : HPSA_02525 (HPSA_02525) Accession : YP_005771121.1 Strain : Helicobacter pylori SouthAfrica7 Genome accession: NC_017361 Putative virulence/resistance : Virulence Product : glutamine synthetase Function : - COG functional category : - COG ID : - EC number : - Position : 514357 - 515802 bp Length : 1446 bp Strand : + Note : COG0174 Glutamine synthetase DNA sequence : ATGATAGTAAGAACTCAAAATACTGAAAGCAAGATCAAAGAATTTTTTGCATTTTGCAAAGAAAATGAAGTGGAATTTGT GGATTTTAGATTCAGCGATATTAAAGGCACTTGGAATCATATCGCTTATTCTTTTGGGGCTTTAACGCATGGCATGTTTA AAGAGGGGATTCCTTTTGATGCGAGTTCTTTTAAAGGCTGGCAAGGCATTGAGCACTCTGATATGATTTTAACCCCTGAT TTGGTGCGTTACTTCATTGACCCTTTTAGTGCAGATGTGAGTGCGGTCGTGTTTTGCGATGTGTATGATGTGTATAAAAA CCAGCCTTATGAAAAATGCCCTAGAAGTATCGCTAAAAAAGCTTTACAACATTTAAAAGATTTAGGTTTGGGCGATGTGG CTTATTTTGGTGCGGAGAATGAATTTTTTATCTTTGATTCCATTAAGATTAAAGACGCTTCCAATTCCCAATACTATGAA GTGGATAGCGAAGAGGGCGAATGGAATAGGGATAGAAGTTTTGAAAATGGCGTCAATTTTGGGCATAGACCGGGCAAGCA AGGAGGCTATATGCCTGTGCCGCCAACGGATACGATGATGGATATTCGCACTGAAATTGTGAAAGTTTTAAACCAAGTGG GGTTAGAAACTTTTGTCGTCCATCATGAAGTCGCGCAAGCACAAGGCGAAGTGGGCGTGAAATTTGGGGATCTAGTGGAA GCCGCTGACAATGTCCAAAAACTCAAATATGTGGTTAAAATGGTCGCTCATTTGAACGGCAAAACCGCCACTTTCATGCC AAAACCTTTGTATGGGGATAACGGGAGCGGGATGCACACCCATGTGAGCGTTTGGAAAAACAATGAAAACCTTTTTAGCG GCGAAACTTACAAGGGCTTGAGCGAATTGGCGTTGCATTTTTTAGGGGGCGTGTTGCACCATGCTAGAGGGTTAGCCGCT TTCACTAACGCTTCTACTAATTCTTATAAACGCCTAATTCCTGGCTATGAAGCCCCATCTATTTTGACTTATTCCGCTAG CAATAGGAGCGCGAGCGTTCGTATCCCTTATGGGATTTCTAAAAATAGCGCTAGGTTTGAATTCAGGTTTCCGGATAGCT CATCAAACCCTTACTTGGCTTTTGGGGCTATTTTAATGGCCGGTATTGATGGCATTAAAAATAAGATCGATCCGGGCGAA GCGATGGATATTAACCTTTTCAAATTGACTTTAGATGAAATCAGAGAAAAGGGTATCAAACAAATGCCCCACACTCTAAG GCGATCGTTAGAAGCGATGTTAGCTGATAAGCAATATTTAAAAGAGGGGCAAGTCTTTAGCGAAGAATTTATCCAAGCCT ACCAGTCGCTTAAATTCAATACCGAAGTGTTTCCATGGGAAAGCAAACCCCATCCTTTTGAATTTATCACCACTTATTCA TGTTAA Protein sequence : MIVRTQNTESKIKEFFAFCKENEVEFVDFRFSDIKGTWNHIAYSFGALTHGMFKEGIPFDASSFKGWQGIEHSDMILTPD LVRYFIDPFSADVSAVVFCDVYDVYKNQPYEKCPRSIAKKALQHLKDLGLGDVAYFGAENEFFIFDSIKIKDASNSQYYE VDSEEGEWNRDRSFENGVNFGHRPGKQGGYMPVPPTDTMMDIRTEIVKVLNQVGLETFVVHHEVAQAQGEVGVKFGDLVE AADNVQKLKYVVKMVAHLNGKTATFMPKPLYGDNGSGMHTHVSVWKNNENLFSGETYKGLSELALHFLGGVLHHARGLAA FTNASTNSYKRLIPGYEAPSILTYSASNRSASVRIPYGISKNSARFEFRFPDSSSNPYLAFGAILMAGIDGIKNKIDPGE AMDINLFKLTLDEIREKGIKQMPHTLRRSLEAMLADKQYLKEGQVFSEEFIQAYQSLKFNTEVFPWESKPHPFEFITTYS C |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| glnA | YP_003728749.1 | glutamine synthetase | Not tested | cag PAI | Protein | 0.0 | 98 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| HPSA_02525 | YP_005771121.1 | glutamine synthetase | VFG1399 | Protein | 5e-90 | 46 |
