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Name : HPSA_00195 (HPSA_00195) Accession : YP_005770676.1 Strain : Helicobacter pylori SouthAfrica7 Genome accession: NC_017361 Putative virulence/resistance : Virulence Product : ComB10 competence protein Function : - COG functional category : - COG ID : - EC number : - Position : 39931 - 41073 bp Length : 1143 bp Strand : + Note : COG2948 Type IV secretory pathway, VirB10 components DNA sequence : ATGAATAAATGGCTTAAGGGGGTGCTGATTGTTGCAGGGGGTTTTGTAACGATTACAACAATTTCTTTAATCTACCACCA AAAGCCAAAAGCCCCCTTAAACAACCCACCTTCTCTTTTAAATGACGATGAGGTGAAATACCCCTTACAGGACTACACTT TCACTCCAAGCTTGCAACCAACCTCTACAGAAAGCTCCAAAGACGCCACTATAAAAGCCTTACAAGAACAGCTAAGAGTC GCTTTAAAAGCCCTAAATTCCAAAGAAATGAATCTTCCTAAAGAAGAAACTAAAGAACTTGCCAACCCTCCCATAGAACC AAAAGCAAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAACTAGATTTATTAGCCTCTCGCATCACCCCTTTCA AACAAAGCCCTAAAAATTACGAAGAAAATTTGATTTTCCCGGTGGATAACCCTAAAGGGATCGATGGCTTTACTAACCTT AAAGAAAAAGACATCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCGGATAAAATGATACCTGCATTTTTGAT CACGCCTATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTCGCTCACATGGGAAAGGCTG TTTTAATCCCTAAAGGTTCTAAAGTCATAGGTTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTG TGGAGTAGGATCATCACCCCCCATGGCATTAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGTTATAACGG CTTGGTGGGGGAATTGATTGAAAGGAACTTCCAACGCTATGGCGTGCCACTATTACTTTCTACGCTCACTAACGGCTTAT TGATTGGGATCACTTCAGCTTTAAACAATAGAGGCAATAAAGAAGAAGCGACTAATTTCTTTGGGGATTATCTTTTAATG CAATTGATGAGGCAAAGCGGTATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCCCCCAT TGTCATCATTAGAGAGGGGAGCAGGGTATTCATTTCGCCTAATACTGACATTTTCTTCCCTATACCCAAAGACAATGAAG TCATCGCTGAGTTTTTGGAGTGA Protein sequence : MNKWLKGVLIVAGGFVTITTISLIYHQKPKAPLNNPPSLLNDDEVKYPLQDYTFTPSLQPTSTESSKDATIKALQEQLRV ALKALNSKEMNLPKEETKELANPPIEPKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPVDNPKGIDGFTNL KEKDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIV WSRIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEATNFFGDYLLM QLMRQSGMGINQVVNQILRDKSKIAPIVIIREGSRVFISPNTDIFFPIPKDNEVIAEFLE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| virB10-1 | YP_002301098.1 | VirB10 type IV secretion protein | Virulence | cag PAI | Protein | 8e-67 | 54 |
