Gene Information

Name : HPSA_01815 (HPSA_01815)
Accession : YP_005770991.1
Strain : Helicobacter pylori SouthAfrica7
Genome accession: NC_017361
Putative virulence/resistance : Unknown
Product : transketolase
Function : -
COG functional category : -
COG ID : -
EC number : 2.2.1.1
Position : 369379 - 371310 bp
Length : 1932 bp
Strand : -
Note : COG0021 Transketolase

DNA sequence :
ATGCAATTGAGTAACGCTGATTTGGAACGATTAAAAAGCATGGCCAACACGCTTCGCTTTTTGTGTGCGGACATGATAGA
TAAAGCCAATAGCGGGCATCCGGGCGTGTGCTTGGGGTTAGCCGATGTGATGGTGGTTTTAAGCTTGCACCTCAATCTCA
ACCCCACCAACCCTAAATGGCTCAATAGGGACAGGTTGGTTTTTAGCGGAGGGCATGCGAGCGCGTTAGCTTATAGCTTG
TTGCATTTGTGGGGCTTTGATTTGAGCTTAGAAGATTTAAAGCATTTCAGACAATTGCACTCTAAAACCCCAGGACACCC
CGAATTGCACCACACCGAAGGCATTGAGATCACAACAGGCCCTTTAGGGCAAGGTTTTGCTAACGCTGTGGGCTTTAGCA
TGGCGAGCCAATACGCTCAAACCCTTTTGAATAAAGAAACGATCTCTCATAAAGTCTATTGCTTGTGTGGGGATGGGGAT
TTGCAAGAAGGCATTAGCTATGAGAGCGCTTCTTTAGCCGGGCATCTTCGCCTTGATAACCTCATCGTGATTTATGATAG
TAACCAAATCAGCATTGAAGGCGCTATTAATATTAGTTTTAGCGAACATGTTAAAATGCGCTTTTTAGCGCAAAATTGGG
AAGTGCTAGAATGCGATGGGCATGACTATCAAGCCATTAATGACGCTTTAGAAACAGCCAAAAAAGCCACCAAACCCACG
CTTTTAATCGCTCACACGATTATTGGCAAGGGGGCTATTGGCTTAGAGGGGAGTGAAAAAACGCATGGTTCGCCATTAAA
CAAAGAAGTGTTAAAACAATCCAAAGAAAACGCTTGCATCAATCCTAATGAAAGCTTTATAATTAGCCCCAAAAACAAAA
TGCATTTTGAAGAAGTGAAAGTCAGGGGTATCAGTTTAGAAGCCTTATGGGAAAAATCCTTAAGCCCTAAAATAAAAGAA
AAAATCCATGCGTTAAAGAATTTTGATTTTAATACCATCCATTACCCCACCTTTAAACAAGGCGAATCTCTAGCCACTAG
GGTGAGTAACGGCATGATTTTAAACGCTATCGCTAAAGAATGCGAAGGCTTTTTAGGGGGAAGTGCGGATTTAGCCCCCT
CTAATAACACGCATTTAAAACATTCTAGCGATTTCCCTTTAGGGCAGAACTTGCATTTTGGGATCAGAGAGCATGCCATG
GGGGCTATCACTAACGCTTTAGCGGCGTATGGCTTGTTTTTGCCTTTTTGCGCGACCTTTTTTGTGTTCAGCGATTATTT
AATGCCAAGCATGCGTTTGAGCGCTTTAATGCGACTAAAAGCCCTTTTTATTTTCACGCATGACAGCATTGGTGTGGGCG
AAGACGGGGCCACACACCAGCCCATAGAACAATTGAGCCATTTACGCGCTTTGCCCAACTTCTATGCTTTCAGGCCAAGT
GACGCTTTTGAAAATACCGCTTGCATGCAAGCAGCGCTCAATTTGAATGCCCCTAGTGCTTTTATTCTATCGCGCCAGAA
TTTACCCGTGCTAGATGAAGTCTCTAAAGAGCAGGTTTTAAAAGGGGCGTATGTTAAACACCCCTCTAAAGATCCTATAA
TCACGCTCGTTGCAAGCGGGAGTGAGGTCTCTTTAGCTTTAGAGAGCGCTAAAATTTTAGAGCGAGAAAATATCCCCACT
CAAGTCATCAGCGCGCCATGCTTTGATTTGTTGATAGAGCAAGATGAAAGCTATCTTAAAGAACTCTTTAAGGGTAAAGT
CTTAGTGGTTGAAGCGAGCCGCGCGATAGAGTGGTATCGTTTTGCGGATAAAATCATTTGCATGGATTCTTTTGGGAGTT
CAGCAAAGGGCGATAAACTCTTTGAAAAATTTGGCTTTAGCGTTGAAAATATTACCAATCAAGCCAAAAGGTTACTCAAC
GCATGCATTTAG

Protein sequence :
MQLSNADLERLKSMANTLRFLCADMIDKANSGHPGVCLGLADVMVVLSLHLNLNPTNPKWLNRDRLVFSGGHASALAYSL
LHLWGFDLSLEDLKHFRQLHSKTPGHPELHHTEGIEITTGPLGQGFANAVGFSMASQYAQTLLNKETISHKVYCLCGDGD
LQEGISYESASLAGHLRLDNLIVIYDSNQISIEGAINISFSEHVKMRFLAQNWEVLECDGHDYQAINDALETAKKATKPT
LLIAHTIIGKGAIGLEGSEKTHGSPLNKEVLKQSKENACINPNESFIISPKNKMHFEEVKVRGISLEALWEKSLSPKIKE
KIHALKNFDFNTIHYPTFKQGESLATRVSNGMILNAIAKECEGFLGGSADLAPSNNTHLKHSSDFPLGQNLHFGIREHAM
GAITNALAAYGLFLPFCATFFVFSDYLMPSMRLSALMRLKALFIFTHDSIGVGEDGATHQPIEQLSHLRALPNFYAFRPS
DAFENTACMQAALNLNAPSAFILSRQNLPVLDEVSKEQVLKGAYVKHPSKDPIITLVASGSEVSLALESAKILERENIPT
QVISAPCFDLLIEQDESYLKELFKGKVLVVEASRAIEWYRFADKIICMDSFGSSAKGDKLFEKFGFSVENITNQAKRLLN
ACI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tktA AAO17218.1 TktA Not tested tcd island Protein 1e-94 41