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Name : lysS (HPSA_00925) Accession : YP_005770816.1 Strain : Helicobacter pylori SouthAfrica7 Genome accession: NC_017361 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : - COG ID : - EC number : 6.1.1.6 Position : 183052 - 184557 bp Length : 1506 bp Strand : + Note : COG1190 Lysyl-tRNA synthetase (class II) DNA sequence : ATGTTTTCTAACCAATACATCCAACAACGCATTCATAAAGCCAACAGCTTGAGAGAAGAAGGGAAAAACCCTTATAAAAA TGGCTTGAAACGAAGCCTGACAAATGCCGCTTTTTTAGAAAAATACGCTTATGTGAAGGATTTAGAAGAGCCTAAAGACA AAGAAAAAGGCGAGAGTATTGTAGGGAGGGTCAAGCTCTTGCGTTTAATGGGTAAGGCATGTTTTATTAAAGTTGAAGAT GAAAGCGCGATTTTACAAGCCTATGTTTCGCAAAATGAATTGAACGATGAATTTAAAAGCTTAAAAAAGCATTTAGAAGT GGGCGATATTGTGTTGGTGAAAGGCTTTCCTTTCGCCACTAAAACCGGTGAATTAAGCATTCATGCCCTAGAATTTCACA TTTTAAGCAAAACCATTGTGCCATTGCCTGAAAAGTTTCATGGATTGAGCGATATAGAGTTGCGTTACCGCCAGCGCTAC TTGGATTTGATAGTCAATCCCAGCGTTAAAGATGTGTTCAAAAAGCGCAGTTTGATTGTCTCTAGCGTGCGGAAATTCTT TGAAATGGAAGGGTTTTTGGAAGTGGAAACCCCGATGATGCACCCCATTCCTGGCGGGGCGAATGCAAGGCCTTTTATCA CTTATCATAACGCTTTAGAAATTGAAAGGTATTTGAGGATCGCCCCAGAATTATACCTTAAACGCTTGATCGTGGGGGGT TTTGAAGCGGTGTTTGAAATCAATCGTAATTTTAGGAATGAAGGCATGGATCATAGCCATAACCCCGAATTTACGATGAT TGAGTTTTATTGGGCGTATCACACTTATGAAGATCTGATTGAATTAAGCAAGAGGTTGTTTGACTACTTGCTAAAGACTT TAAACTTAGATTCAAAAATCATTTATAACGACATGGAAGTGGATTTCAATCAAACGAGCGTGATTTCCTATTTAGACGCT TTAGAAACAATAGGGGGTATTAGTAAGGAGATTTTAGAAAAAGAAGACAAACTTTTGGCTTATTTGTTAGAGCAAGGCGT CAAAGTAGAGTCCAATCTCACTCATGGCAAATTGCTCGCTGAAGCGTTTGGTCATTTTGTGGAGCATAAACTCATTCACC CCACTTTTGTAACGCAATACCCTATTGAGATTAGCCCGCTAGCCAGACGCAACGATAGTAACCCTAACATTGCTGATAGA TTTGAATTGTTTATTGCAGGAAAGGAAATCGCTAACGGCTTTAGCGAGTTGAATGACCCCTTAGATCAATTAGAGCGCTT TAAAAGTCAAGTAGCCGAAAAAGAAAAAGGCGATGAAGAGGCCCAATACATGGACGAAGATTATGTGTGGGCATTAGCTC ATGGAATGCCTCCCACTGCAGGGCAAGGCATAGGTATTGACAGATTGGTGATGTTGCTCACTGGGGCTAAAAGCATTAAA GATGTGATTTTATTCCCAGCGATGCGTCCTGTTAAAAACGATTTTAATGTTGAAAGTGGAGAATAA Protein sequence : MFSNQYIQQRIHKANSLREEGKNPYKNGLKRSLTNAAFLEKYAYVKDLEEPKDKEKGESIVGRVKLLRLMGKACFIKVED ESAILQAYVSQNELNDEFKSLKKHLEVGDIVLVKGFPFATKTGELSIHALEFHILSKTIVPLPEKFHGLSDIELRYRQRY LDLIVNPSVKDVFKKRSLIVSSVRKFFEMEGFLEVETPMMHPIPGGANARPFITYHNALEIERYLRIAPELYLKRLIVGG FEAVFEINRNFRNEGMDHSHNPEFTMIEFYWAYHTYEDLIELSKRLFDYLLKTLNLDSKIIYNDMEVDFNQTSVISYLDA LETIGGISKEILEKEDKLLAYLLEQGVKVESNLTHGKLLAEAFGHFVEHKLIHPTFVTQYPIEISPLARRNDSNPNIADR FELFIAGKEIANGFSELNDPLDQLERFKSQVAEKEKGDEEAQYMDEDYVWALAHGMPPTAGQGIGIDRLVMLLTGAKSIK DVILFPAMRPVKNDFNVESGE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 2e-105 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_005770816.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 1e-105 | 50 |
