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Name : HPSA_07040 (HPSA_07040) Accession : YP_005771969.1 Strain : Helicobacter pylori SouthAfrica7 Genome accession: NC_017361 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : - COG ID : - EC number : 6.1.1.11 Position : 1421609 - 1422856 bp Length : 1248 bp Strand : - Note : COG0172 Seryl-tRNA synthetase DNA sequence : ATGATTGATAAGAAACTTTTATTGCAAGATTTTGATAAGGTGGCTCATTCTTTAAAAAAGCGTAACAGCGCGATGGATGA TGAGCTAGAGCGTTTGCGCGAAATCATCACGCATTATAAAAAACAACTCATTGAGTTAGAAAGCTTGCAAGCCTTCCAAA ACAAGGTTTCTAAAGAATTTGGTATCAAAATGGCTCAAAAAGTGGGTGCAAGCGATCTCAAAAAAGAGCTAGAAAACAAT AAAATCAAATTGAATGAGCTTTCTAAAAGCGTGAGCGAGTTGGAGCAAGAAATTGATTCAAAGCTTTCCATAATCCCTAA TCTAGTGGATGAAAAAACCCCTTTAGGCACAAGCGAAGAGGATAATGTAGAAATTAAAAAAATTTTAACCCCAAGAAATT TCACTTTCACGCCTAAAGAGCATTTTGAACTCGCTCAAAAAAATGGCTGGATTGATTTTGAAAGCGGCGTGAAACTCGCT AAAAGCCGTTTTTCAGTCATTAGGGGTTTTGGGGCTAAAGTTTATCGCGCGCTCATTCATTTAATGTTGGATTTTAACGA AAAAAACGGCTTTGAAATCATCTACACGCCGGCTTTAGTGAATGAAAAAATGCTTTTTGGGACCGGGCAATTACCCAAAT TCAAAGAAGACGTTTTTAAAATAGAAAATGAAAATTTGTATCTGATCCCCACTTCTGAAGTAACGCTCACCAATCTATAC CACGACACGATCATTAGCGTTGAAAAACTCCCCATTAAAATGACCGCGCACACGCCTTGTTTCAGGAGCGAAGCAGGGAG CGCGGGCAAGGACACAAGGGGAATGATAAGGCAACACCAATTTGACAAGGTGGAATTAGTGGCTATCACGCACCCTAAAG AAAGCGATGCCATGCAAGAATATATGCTAGAGAGCGCGAGCGCGATTTTAAAGGCGTTGGAATTGCCTCACCGGTTCGTG CAATTATGCAGTGGGGATTTGGGCTTTAGCGCAAGCAACACGATAGATATTGAAGTGTGGCTGCCCGGGCAAAATTGTTA CAGAGAAATCAGCTCCGTGTCTAACACGAGGGATTTTCAAGCCAGGCGGGCCAAAATCCGCTTCAAGGAAAATCAAAAAA ACCAATTAGCGCACACCTTGAATGGTTCTTCTTTAGCGGTAGGCAGGACGATGGTCGCTTTAATGGAAAACCACCAGCAA GCGGATGGGAGCATTCATATTCCTAAGGCGTTAGAAAAATACCTTTAA Protein sequence : MIDKKLLLQDFDKVAHSLKKRNSAMDDELERLREIITHYKKQLIELESLQAFQNKVSKEFGIKMAQKVGASDLKKELENN KIKLNELSKSVSELEQEIDSKLSIIPNLVDEKTPLGTSEEDNVEIKKILTPRNFTFTPKEHFELAQKNGWIDFESGVKLA KSRFSVIRGFGAKVYRALIHLMLDFNEKNGFEIIYTPALVNEKMLFGTGQLPKFKEDVFKIENENLYLIPTSEVTLTNLY HDTIISVEKLPIKMTAHTPCFRSEAGSAGKDTRGMIRQHQFDKVELVAITHPKESDAMQEYMLESASAILKALELPHRFV QLCSGDLGFSASNTIDIEVWLPGQNCYREISSVSNTRDFQARRAKIRFKENQKNQLAHTLNGSSLAVGRTMVALMENHQQ ADGSIHIPKALEKYL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 7e-78 | 46 |
