Gene Information

Name : fliQ (HPSA_06675)
Accession : YP_005771906.1
Strain : Helicobacter pylori SouthAfrica7
Genome accession: NC_017361
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliQ
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1353549 - 1353815 bp
Length : 267 bp
Strand : -
Note : COG1987 Flagellar biosynthesis pathway, component FliQ

DNA sequence : 
ATGGAATCACAGCTCATGAAACTCGCTATTGAAACTTATAAAATCACTTTGATGATTTCTTTACCGGTCTTATTGGTGGG
GTTAGTGGTGGGGTTGTTGGTGAGTATTTTTCAAGCGACCACTCAAATCAATGAAATGACTTTGTCTTTTGTGCCTAAGA
TTTTAGCGGTGATTGGCGTGCTGATTTTAACCATGCCTTGGATGACTAACATGCTTTTAGATTACACCAAAACCTTAATC
AAGCTCATTCCTAAAATCATAGGCTAG

Protein sequence : 
MESQLMKLAIETYKITLMISLPVLLVGLVVGLLVSIFQATTQINEMTLSFVPKILAVIGVLILTMPWMTNMLLDYTKTLI
KLIPKIIG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaS NP_456108.1 putative type III secretion protein Virulence SPI-2 Protein 5e-04 42
ssaS NP_805091.1 type III secretion protein Virulence SPI-2 Protein 5e-04 42
ssaS YP_216428.1 secretion system apparatus protein SsaS Virulence SPI-2 Protein 4e-04 42
ssaS NP_460385.1 type III secretion system apparatus protein Virulence SPI-2 Protein 4e-04 42
ssaS CAA68200.1 secretion system apparatus, SsaS Virulence SPI-2 Protein 3e-04 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliQ YP_005771906.1 flagellar biosynthesis protein FliQ VFG2339 Protein 9e-09 55
fliQ YP_005771906.1 flagellar biosynthesis protein FliQ VFG0520 Protein 1e-04 42