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Name : serS (HMPREF4655_20078) Accession : YP_005769240.1 Strain : Helicobacter pylori 35A Genome accession: NC_017360 Putative virulence/resistance : Unknown Product : serine--tRNA ligase Function : - COG functional category : - COG ID : - EC number : 6.1.1.11 Position : 70052 - 71299 bp Length : 1248 bp Strand : - Note : COG: COG0172; Pfam: PF02403, PF00587; InterPro: IPR002317 DNA sequence : ATGATTGATAGAAAACTTTTATTGCAAGATTTTGAGATGGTGGCTCTTTCTTTAAAAAAGCGTAATAATGCGATGGATGA TGAATTGGAGCGCTTGCGCGAAGTCATCACGCATTATAAAAAGCAACTCATTGAATTAGAAAGCTTGCAAGCCTTTCAAA ACAAGGTTTCTAAAGAATTTGGTATCAAAATGGCTCAAAAAGTGGATACAAGCGATCTCAAAAAAGAGCTAGAAAACAAT AAAATCAAACTGAATGAGCTTTCCAAAAGCGTGGGCGAATTGGAACAACAAATAGATTTAAAGCTTTCAATAATCCCTAA TCTGGTGGATGAAAAAACCCCTTTAGGCGCAAGCGAAGAAGACAACATAGAAATCAAAAAAATCTTAACCCCTAGAAATT TCACTTTCAAACCCAAAGAACATTTTGAACTCGCTCAACAAAATGGCTGGATTGATTTTGAAAGCGGCGTGAAACTCGCT AAAAGCCGTTTTTCTGTCATCAGGGGTTTTGGGGCTAAAATTTATCGCGCGCTCATCCATTTAATGTTGGATTTTAATGA AAAAAATGGCTTTGAAATCATCTATACGCCGGCGTTAGTGAATGAAAAAATGCTTTTTGGGACCGGGCAATTGCCCAAAT TCAAAGAAGATGTTTTCAAAATAGAAAATGAAAATTTGTATCTGATCCCTACCGCTGAAGTAACGCTCACCAATCTATAC AACGACACGATTGTTAGCGTTGAAAAACTCCCTATTAAAATGACCGCGCACACGCCTTGTTTTAGGAGCGAAGCAGGGAG TGCGGGCAAGGACACAAGGGGGATGATAAGACAGCACCAGTTTGATAAAGTAGAGCTAGTGGCTATCGTGCACCCTAAAG AAAGCGATGCCATGCAAGAGCATATGCTAGAGAGCGCGAGCGAAATTTTAAAGGCTTTGGAATTACCGCACCGGTTTGTG CAATTGTGCAGCGCGGATTTAGGCTTTAGCGCAAGCAACACGATAGATATTGAAGTGTGGCTACCCGGGCAAAATTGCTA CAGAGAAATCAGCTCGGTGTCTAACACGAGGGATTTTCAAGCCAGGCGCGCGAAAATCCGCTTCAAAGAAAATCAAAAAA ACCAATTAGCGCACACCTTAAACGGCTCTTCTTTAGCGGTAGGCAGGACGATGGTCGCTTTAATGGAAAACCACCAGCAA GCGGATGGGAGCATCCATATTCCTAAGGCGTTAGAAAAATACCTTTAA Protein sequence : MIDRKLLLQDFEMVALSLKKRNNAMDDELERLREVITHYKKQLIELESLQAFQNKVSKEFGIKMAQKVDTSDLKKELENN KIKLNELSKSVGELEQQIDLKLSIIPNLVDEKTPLGASEEDNIEIKKILTPRNFTFKPKEHFELAQQNGWIDFESGVKLA KSRFSVIRGFGAKIYRALIHLMLDFNEKNGFEIIYTPALVNEKMLFGTGQLPKFKEDVFKIENENLYLIPTAEVTLTNLY NDTIVSVEKLPIKMTAHTPCFRSEAGSAGKDTRGMIRQHQFDKVELVAIVHPKESDAMQEHMLESASEILKALELPHRFV QLCSADLGFSASNTIDIEVWLPGQNCYREISSVSNTRDFQARRAKIRFKENQKNQLAHTLNGSSLAVGRTMVALMENHQQ ADGSIHIPKALEKYL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 3e-77 | 45 |
