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Name : katA (HMPREF4655_20720) Accession : YP_005769832.1 Strain : Helicobacter pylori 35A Genome accession: NC_017360 Putative virulence/resistance : Unknown Product : catalase Function : - COG functional category : - COG ID : - EC number : 1.11.1.6 Position : 700288 - 701850 bp Length : 1563 bp Strand : + Note : COG: COG0753; Pfam: PF00199; InterPro: IPR011614 DNA sequence : TTGGTATCAGATTACGAAGATTTAAAATCAAATAAAGGAAAAAAGATGGTTAATAAAGATGTGAAACAAACCACTGCTTT TGGTGCTCCCGTTTGGGATGACAACAATGTGATTACGGCTGGTCCTAGAGGTCCTGTTTTATTACAAAGCACTTGGTTTT TGGAAAAGTTAGCAGCGTTTGATCGAGAAAGGATTCCTGAAAGGGTGGTGCATGCTAAAGGAAGCGGAGCTTATGGCACT TTCACCGTGACTAAAGACATCACTAAATACACTAAAGCGAAAATTTTCTCTAAAGTGGGCAAAAAAACAGAATGCTTTTT CAGATTCTCTACTGTGGCTGGTGAAAGAGGCGCTGCGGATGCGGTGAGAGACCCTAGAGGTTTTGCGATGAAGTATTACA CTGAAGAGGGTAATTGGGATTTAGTAGGGAACAACACGCCTGTTTTCTTTATCCGTGATGCGATCAAATTCCCTGATTTC ATCCACACTCAAAAACGAGATCCTCAAACCAATTTGCCTAACCCCGACATGGTATGGGATTTTTGGAGCAATGTTCCTGA AAGTTTGTATCAAGTCACATGGGTTATGAGCGATAGGGGTATTCCTAAATCTTTCCGCCACATGGATGGTTTTGGCAGCC ACACTTTTAGCCTTATCAACGCGAAAGGCGAACGCTTTTGGGTGAAATTCCACTTTGAAACCATGCAAGGCGTTAAGCAC TTGACTAATGAAGAAGCCGCAGAAATCAGAAAGCATGATCCTGATTCCAATCAAAGGGATTTATTCAATGCGATCGCTAG AGGGGATTTCCCAAAATGGAAATTAAGCATTCAAGTGATGCCAGAAGAAGATGCTAAGAAGTATCGATTCCATCCGTTTG ATGTGACTAAAATTTGGTATCTCAAAGATTATCCATTGATGGAAGTGGGCATTGTAGAGTTGAATAAAAATCCTGAAAAT TATTTCGCAGAAGTGGAGCAAGCCGCATTCTCTCCGGCTAATGTCGTTCCTGGAATTGGCTATAGCCCTGATAGGATGTT ACAAGGGCGCTTGTTCTCTTATGGGGACACACACCGCTACCGCTTAGGGGTTAATTATCCTCAGATACCGGTCAATAAAC CAAGGTGCCCGTTCCACTCTTCTAGCAGAGATGGTTACATGCAAAACGGATACTACGGCTCTTTACAAAACTATACGCCT AGCTCATTGCCTGGCTATAAAGAAGATAAGAGTGCTAGGGATCCTAAGTTTAACTTAGCTCATATTGAGAAAGAGTTTGA AGTGTGGAATTGGGATTACAGAGCTGATGATAGCGATTACTACACCCAACCAGGTGATTACTACCGCTCATTGCCAGCTG ATGAAAAAGAAAGGTTGCATGACACTATTGGAGAGTCTTTAGCTCATGTTACCCATAAGGAAATTGTGGATAAACAATTG GAGCATTTCAAGAAAGCTGACCCCAAATACGCTGAGGGAGTTAAAAAAGCTCTTGAAAAACACCAAAAAATGATGAAAGA CATGCATGGAAAAGACATGCACCACATGAAAAAGAAAAAGTAA Protein sequence : MVSDYEDLKSNKGKKMVNKDVKQTTAFGAPVWDDNNVITAGPRGPVLLQSTWFLEKLAAFDRERIPERVVHAKGSGAYGT FTVTKDITKYTKAKIFSKVGKKTECFFRFSTVAGERGAADAVRDPRGFAMKYYTEEGNWDLVGNNTPVFFIRDAIKFPDF IHTQKRDPQTNLPNPDMVWDFWSNVPESLYQVTWVMSDRGIPKSFRHMDGFGSHTFSLINAKGERFWVKFHFETMQGVKH LTNEEAAEIRKHDPDSNQRDLFNAIARGDFPKWKLSIQVMPEEDAKKYRFHPFDVTKIWYLKDYPLMEVGIVELNKNPEN YFAEVEQAAFSPANVVPGIGYSPDRMLQGRLFSYGDTHRYRLGVNYPQIPVNKPRCPFHSSSRDGYMQNGYYGSLQNYTP SSLPGYKEDKSARDPKFNLAHIEKEFEVWNWDYRADDSDYYTQPGDYYRSLPADEKERLHDTIGESLAHVTHKEIVDKQL EHFKKADPKYAEGVKKALEKHQKMMKDMHGKDMHHMKKKK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| katA | ABD94664.1 | catalase isozyme A | Not tested | ExoU island A | Protein | 7e-136 | 60 |
| katA | YP_005126717.1 | catalase | Not tested | Not named | Protein | 3e-93 | 52 |
| katA | YP_005684630.1 | catalase | Not tested | PiCp 3 | Protein | 6e-91 | 47 |
| katA | YP_005680448.1 | catalase | Not tested | PiCp 3 | Protein | 6e-91 | 47 |
| katA | YP_005682539.1 | catalase | Not tested | PiCp 3 | Protein | 6e-91 | 47 |
| katA | YP_003782575.1 | catalase | Not tested | PiCp 3 | Protein | 6e-91 | 47 |
