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Name : clpB (HMPREF4655_20506) Accession : YP_005769631.1 Strain : Helicobacter pylori 35A Genome accession: NC_017360 Putative virulence/resistance : Virulence Product : chaperone protein ClpB Function : - COG functional category : - COG ID : - EC number : - Position : 492062 - 494632 bp Length : 2571 bp Strand : + Note : COG: COG0542; Pfam: PF02861, PF00004, PF07724; InterPro: IPR003593 DNA sequence : ATGAATTTATTTGAAAAAATGACCGACCAATTGCATGAGACTTTAGACAGCGCGCTCGCTCTAGCTTTACACCATAAAAA CGCTGAAGTAACGCCCTTGCACATGCTTTTTGTCATGCTCAATAACTCCCAAGGCATCCTCATTCAAGCCTTACAAAAAA TGTCTGTGGATATTCAAGCCTTAAGGCTTAGCGTTCAAAGCGAATTGAATAAGTTGGCTAAAGTTTCACAAATCAACAAG CAAAATATCCAATTAAACCAAGCTCTAATCCAAAGTTTAGAAAACGCTCAAGGCTTGATGGCTAAAATTGGCGATTCTTT CATCGCTACAGATGTGTATCTTTTGGCGAACATGAGCCTTTTTGAAAGCGTTCTAAAACCTTATTTAGACACTAAGGAAT TGCAAAAAACTTTAGAATCTTTAAGAAAAGGCACGACTATCCAAGGTAAAAACGATGATTCTAATTTGGAAAGTTTGGAG AAATTTGGCATTGATTTGACGCAAAAAGCCTTAGAAAATAAGCTCGATCCGGTGATTGGGAGGGATGAAGAAATCATTCG CATGATGCAAATTTTGATAAGAAAAACAAAAAATAACCCTATTTTACTGGGTGAGCCTGGAGTGGGGAAAACGGCGGTTG TGGAGGGTTTGGCCCAACGCATTGTGAATAAGGAAGTGCCTAAAACGCTTTTAAACAAACGAGTCGTCGCTTTAGATTTA AGCTTATTGGTGGCTGGAGCCAAATACAGAGGCGAGTTTGAAGAGCGCTTGAAAAAGGTGATTGAAGAAGTTAAAAAAAG CGCGAATGTGATTTTATTCATTGATGAAATCCACACGATTGTAGGGGCTGGGGCTAGTGAGGGGGGCATGGATGCGGCTA ATATTTTAAAACCCGCGCTCGCTAGGGGGGAATTGCACACGATTGGAGCGACCACTTTGAAAGAATACCGCAAGTATTTT GAAAAAGACATGGCACTACAAAGGCGTTTCCAACCCATTTTACTCAATGAGCCTAGCATCAATGAGGCTTTACAGATTTT AAGGGGGTTAAAAGAAACTTTAGAAACGCACCATAATATCACTATCAATGACTCCGCGCTTATAGCGAGCGCTAAACTCT CTAGCCGTTATATCACCGATAGGTTTTTACCCGATAAAGCGATTGATTTGATTGATGAGGGGGCGGCCCAATTAAAAATG CAAATGGAATCAGAGCCGGCAAAACTCTCTAGCGTTAAGCGCTCCATTCAAAGATTAGAAATGGAAAGACAAGCCCTTGA AATGGAAAAAAAAGAGAGCAATGCCAAACGCATGCAAGAAATCCTTAAAGAATTGAGCGATTTGAAAGAAGAAAAAATCC AATTAGAAGCGCAATTTGAGAACGAAAAAGAAGTGTTTAGAGAAATTTCACGCTTGAAAATGGAAACGGAAAGCTTGAAA AAAGAGGCTGAGAGGTTTAAGCGCAATGGGGATTACCAGCAAGCGGGTGAAATTGAATACTCTAAAATCCCTGAAAATAA AAAGAAAGAAGAAGAATTGCAGCATAAATGGGAAGCGATGCAACAAAACGGGGCGTTGTTGCAAAACGCTTTAACCGAAA ACAACATCGCTGAGATCGTGAGCCAATGGACGCATATCCCGGTCCAAAAAATGCTCCAGAGCGAAAAAAATAGGGTTTTA AACATTGAAAGCGAATTGCAAAAAAGAGTGGTGGGGCAAGAAAAAGCAATCAAAGCGATCGCTAAAGCGATTAAAAGGAA TAAGGCCGGGCTTAGCGATAGCAATAAACCCATAGGGAGCTTTCTCTTTTTAGGGCCAACGGGCGTGGGTAAAACTGAGA GCGCTAAAGCTTTGGCGCAATTCTTGTTTGATAGTGATAAAAATCTTATAAGAATTGACATGAGCGAATACATGGAAAAA CATGCCATAAGCCGTCTTATTGGGGCTGCTCCTGGGTATGTGGGCTATGAAGAAGGCGGGCAATTGACCGAAGCGGTGCG CAGAAAACCCTATAGCGTGGTGCTGTTAGATGAAGTGGAAAAAGCCCATCCGGATGTGTTTAATCTCTTGTTGCAGGTTT TAGATGAAGGGCATTTAACCGATAGTAAGGGCGTGAGGGTGGATTTCAAAAATACGATTTTGATTTTAACCAGCAATGTG GCTAGCGGCGCGCTTTTAGAAGAAAATTTGAGTGAAGCCGATAAACAAAAAGCGATCAAAGAGAGTTTGAGGCAATTCTT CAAGCCGGAATTTTTAAACCGCTTAGATGAAATCATCTCCTTTAACGCCCTAGATAGCCATGCTGTCGCTAATATCGTGG GGATTCTCTTTGAAAACATTCAAAAAAAAGCGCTTGAAAGAGGCATTAATATAACCCTAGACGAAGAGGCAAAAGAATTG ATCGCTGAAGCGGGATTTGACAGATTTTATGGCGCTAGACCCTTAAAGCGTGCGCTCTATGAAATGGTAGAAGACAAACT CGCTGAACTCATTTTAGAGGATAAAATTAAAGAGAATGACAGCGTGGCGTTTGTGGTAGAAAATAACGAAATTGTGCCTA AGATTAAGTGA Protein sequence : MNLFEKMTDQLHETLDSALALALHHKNAEVTPLHMLFVMLNNSQGILIQALQKMSVDIQALRLSVQSELNKLAKVSQINK QNIQLNQALIQSLENAQGLMAKIGDSFIATDVYLLANMSLFESVLKPYLDTKELQKTLESLRKGTTIQGKNDDSNLESLE KFGIDLTQKALENKLDPVIGRDEEIIRMMQILIRKTKNNPILLGEPGVGKTAVVEGLAQRIVNKEVPKTLLNKRVVALDL SLLVAGAKYRGEFEERLKKVIEEVKKSANVILFIDEIHTIVGAGASEGGMDAANILKPALARGELHTIGATTLKEYRKYF EKDMALQRRFQPILLNEPSINEALQILRGLKETLETHHNITINDSALIASAKLSSRYITDRFLPDKAIDLIDEGAAQLKM QMESEPAKLSSVKRSIQRLEMERQALEMEKKESNAKRMQEILKELSDLKEEKIQLEAQFENEKEVFREISRLKMETESLK KEAERFKRNGDYQQAGEIEYSKIPENKKKEEELQHKWEAMQQNGALLQNALTENNIAEIVSQWTHIPVQKMLQSEKNRVL NIESELQKRVVGQEKAIKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFLFDSDKNLIRIDMSEYMEK HAISRLIGAAPGYVGYEEGGQLTEAVRRKPYSVVLLDEVEKAHPDVFNLLLQVLDEGHLTDSKGVRVDFKNTILILTSNV ASGALLEENLSEADKQKAIKESLRQFFKPEFLNRLDEIISFNALDSHAVANIVGILFENIQKKALERGINITLDEEAKEL IAEAGFDRFYGARPLKRALYEMVEDKLAELILEDKIKENDSVAFVVENNEIVPKIK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 3e-139 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | YP_005769631.1 | chaperone protein ClpB | VFG0079 | Protein | 1e-158 | 43 |
| clpB | YP_005769631.1 | chaperone protein ClpB | VFG2076 | Protein | 1e-111 | 42 |
