Gene Information

Name : HMPREF4655_21074 (HMPREF4655_21074)
Accession : YP_005770161.1
Strain : Helicobacter pylori 35A
Genome accession: NC_017360
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1055356 - 1056114 bp
Length : 759 bp
Strand : +
Note : COG: COG3736; Pfam: PF04335; InterPro: IPR007430

DNA sequence : 
ATGTTAGGGAAAAAAAACGAGGAAGTCTTGATTGATGAAAATTTAGTTGGGGGTGTGATAGCCCTTGATAGATTGGCAAA
ACTCAATAAGGCCAATAGGACTTTCAAAAGGGCTTTTTATCTCTCTATGGCACTCAATATCGCCGCTGTAGCGAGTATTG
TGATGATGATGCCTTTGAAGAAAACAGATATATTTGTTTATGGCATTGATCGATACACAGGAGAATTTAAAATTGTCAAA
CGCTCCGATGCTAGGCAAATTGTCAATTCTGAAGCTGTTGTGGATAGTGCAACTTCAAAATTTGTTTCATTGCTGTTTGG
TTATAGCAAAAACTCTTTGAGGGATCGCAAGGATCAACTAATGCAGTATTGCGATGTGAGTTTCCAAACCCAAGCAATGA
GGATGTTCAATGAAAATATCAGACAATTTGTAGATAAAGTCCGAGCAGAAGCTATCATTAGCTCCAACATACAAAGAGAA
AAAGTCAAAAATAGTCCCTTAACGAGATTAACATTTTTCATTACCATCAAAATCACACCCGATACAATGGAAAATTATGA
ATATATTACTAAAAAACAAGTAACTATTTATTATGATTTTGCTAGAGGTAACTCTTCTCAAGAAAATCTTATCATCAATC
CTTTTGGCTTCAAAGTGTTTGACATTCAAATCACAGATTTACAAAACGAACAGACGGTAAGCGAAATTTTGAGAAAGATT
AAAGAAGTGGAATCAAAAAATAAGGCACTAGAGAAATAA

Protein sequence : 
MLGKKNEEVLIDENLVGGVIALDRLAKLNKANRTFKRAFYLSMALNIAAVASIVMMMPLKKTDIFVYGIDRYTGEFKIVK
RSDARQIVNSEAVVDSATSKFVSLLFGYSKNSLRDRKDQLMQYCDVSFQTQAMRMFNENIRQFVDKVRAEAIISSNIQRE
KVKNSPLTRLTFFITIKITPDTMENYEYITKKQVTIYYDFARGNSSQENLIINPFGFKVFDIQITDLQNEQTVSEILRKI
KEVESKNKALEK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cagV YP_005774539.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-114 100
cagV YP_005777274.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-114 100
HP0530 BAD14055.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-114 100
HP0530 BAD13946.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-113 100
cag10 AAR03954.1 Cag10 Virulence cag PAI Protein 5e-113 99
HP0530 NP_207326.1 cag pathogenicity island protein (cag10) Virulence cag PAI Protein 3e-113 99
cag10 AAR03923.1 Cag10 Virulence cag PAI Protein 1e-113 99
cagV YP_005779060.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-113 99
HP0530 BAD13836.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-113 99
HP0530 BAD13918.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-113 99
HP0530 BAD13891.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-114 99
HP0530 BAD13863.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-113 99
HP0530 BAD13782.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-113 99
HP0530 BAD13809.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-113 99
orf17 NP_223197.1 cag island protein Virulence cag PAI Protein 4e-113 99
HP0530 BAD14029.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-113 99
cagV YP_005775733.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-113 99
cag10 AAR03865.1 Cag10 Virulence cag PAI Protein 1e-113 99
HP0530 BAD14001.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-113 99
cag10 AAR03893.1 Cag10 Virulence cag PAI Protein 7e-113 99
cagV YP_003728734.1 cag pathogenicity island protein V Virulence cag PAI Protein 8e-113 99
cag-V AAF80201.1 Cag-V Virulence cag PAI Protein 7e-113 99
cagV AGC69797.1 cag pathogenicity island protein V Virulence cag PAI Protein 6e-113 99
HP0530 BAD13973.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-112 98

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HMPREF4655_21074 YP_005770161.1 cag pathogenicity island protein VFG0290 Protein 1e-113 99