Gene Information

Name : HMPREF4655_21072 (HMPREF4655_21072)
Accession : YP_005770159.1
Strain : Helicobacter pylori 35A
Genome accession: NC_017360
Putative virulence/resistance : Virulence
Product : CAG pathogenicity island protein 12
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1053577 - 1054419 bp
Length : 843 bp
Strand : -
Note : -

DNA sequence : 
ATGAAACTGAGAGCAAGTGTTTTAATCGGTGCGACAATTCTGTGCTTAATTTTAAGCGCATGCAGTAATTATGCGAAAAA
AGTGGTGAAACAAAAGAACCATGTTTATACGCCTGTGTATAATGAACTGATAGAGAAGTATAGTGAGATACCCTTAAATG
ACAAACTCAAAGACACACCATTCATGGTGCAAGTGAAGTTGCCAAATTACAAGGACTATTTGTTGGATAATAAACAAGTT
GTATTAACTTTCAAACTTGTTCATCATTCTAAGAAGATTACGCTCATAGGCGATGCCAATAAGATACTTCAATACAAGAA
TTACTTCCAAGCTAATGGAGCAAGATCTGACATTGATTTTTACTTGCAGCCTACTTTGAATCAAAAGGGTGTGGTGATGA
TAGCGAGTAACTACAATGATAATCCCAACAACAAAGAACAACCACAGACCTTTGATGTGTTGCAAGGAAGTCAGCCAATG
CTAGGAGCTAACACAAAAAACTTGCATGGCTATGATGTGAGTGGAGCAAACAACAAGCAAGTGATCAATGAAGTGGCAAG
AGAAAAAGCTCAGCTAGAAAAAATCAATCAGTATTACAAAACGCTCTTACAAGACAAGGAACAAGAATATACCACTAGAA
AAAATAACCAACGAGAAATTTTAGAAACATTGAGTAATCGTGCAGGTTATCAAATGAGACAGAATGTGATTAGTTCTGAG
ATTTTTAAGAATGGCAACTTGAACATGCAAGCCAAAGAAGAAGAAGTTAGGGAGAAGCTGCAAGAAGAAAGAGAGAATGA
ATACTTGCGCAATCAAATCAGAAGTTTGCTCAGTGGTAAGTGA

Protein sequence : 
MKLRASVLIGATILCLILSACSNYAKKVVKQKNHVYTPVYNELIEKYSEIPLNDKLKDTPFMVQVKLPNYKDYLLDNKQV
VLTFKLVHHSKKITLIGDANKILQYKNYFQANGARSDIDFYLQPTLNQKGVVMIASNYNDNPNNKEQPQTFDVLQGSQPM
LGANTKNLHGYDVSGANNKQVINEVAREKAQLEKINQYYKTLLQDKEQEYTTRKNNQREILETLSNRAGYQMRQNVISSE
IFKNGNLNMQAKEEEVREKLQEERENEYLRNQIRSLLSGK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0532 BAD13948.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-119 100
cagT YP_005774537.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-119 100
HP0532 BAD14057.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-119 100
cagT YP_005775735.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-119 100
HP0532 BAD13784.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-119 100
HP0532 BAD13893.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-119 100
cagT YP_005779058.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-119 100
HP0532 BAD13920.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-118 99
HP0532 BAD14003.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-118 99
HP0532 BAD13865.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-119 99
cag12 AAR03895.1 Cag12 Virulence cag PAI Protein 1e-118 99
HP0532 BAD13975.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-118 99
cagT AGC69799.1 cag pathogenicity island protein T Virulence cag PAI Protein 1e-118 99
cag12 AAR03925.1 Cag12 Virulence cag PAI Protein 4e-118 99
cagT NP_223199.1 cag island protein Virulence cag PAI Protein 3e-118 99
HP0532 BAD13838.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-119 99
cag12 AAR03956.1 Cag12 Virulence cag PAI Protein 4e-118 99
HP0532 NP_207328.1 cag pathogenicity island protein (cag12) Virulence cag PAI Protein 1e-118 99
HP0532 BAD13811.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-119 99
cagT AAF80203.1 CagT Virulence cag PAI Protein 4e-118 99
cagT YP_003728732.1 cag pathogenicity island protein T Virulence cag PAI Protein 1e-118 99
HP0532 BAD14031.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-118 99
cagT YP_005777276.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-119 99
cag12 AAR03867.1 Cag12 Virulence cag PAI Protein 2e-118 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HMPREF4655_21072 YP_005770159.1 CAG pathogenicity island protein 12 VFG0292 Protein 6e-119 99