Gene Information

Name : HMPREF4655_21068 (HMPREF4655_21068)
Accession : YP_005770155.1
Strain : Helicobacter pylori 35A
Genome accession: NC_017360
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1051585 - 1051965 bp
Length : 381 bp
Strand : -
Note : -

DNA sequence : 
GTGCTCTCTGCTAAAACACGCATTAGAACTCAGAGCAAGCAAGAACTTGTGCAACCAAAAATAAAAGGATTGGTTATGGG
AAAAATTTTAGCTTCTTTGTTGGGTGGTGGGACAAATCTTTTTACAGGTTTATCTAGTGATCTGTTTTCTATGATATTAA
ATTTTTTGTTCTTTCTAATGTTAATGATGGGACTTAATGAAATATTAGAGAAGAAATTCAACTTACCCATGGATAATATC
AAGAATTTTATGACGGAAGTGCTGAAGAATGGATTTGGTAGTATGAAAAACATGGGATCTGCTTTGATTGGCAATGGTTT
TAGCAGTAGCAAATCAGACAAAACCGCTAATAAAATGAGTGTCCCCCAAGTAAAACTTTAG

Protein sequence : 
MLSAKTRIRTQSKQELVQPKIKGLVMGKILASLLGGGTNLFTGLSSDLFSMILNFLFFLMLMMGLNEILEKKFNLPMDNI
KNFMTEVLKNGFGSMKNMGSALIGNGFSSSKSDKTANKMSVPQVKL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0535 BAD13951.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-32 99
cagQ AAC44691.1 CagQ Virulence cag PAI Protein 8e-27 88
cag14 AAR03897.1 Cag14 Virulence cag PAI Protein 8e-27 88
cag14 AAR03958.1 Cag14 Virulence cag PAI Protein 8e-27 88
cagQ NP_223201.1 cag island protein Virulence cag PAI Protein 1e-26 88
HP0535 BAD14033.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-27 88
HP0535 NP_207331.1 cag pathogenicity island protein (cag14) Virulence cag PAI Protein 5e-27 87
HP0535 BAD13868.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-26 87
cag14 AAR03927.1 Cag14 Virulence cag PAI Protein 2e-26 87
cag14 AAR03869.1 Cag14 Virulence cag PAI Protein 2e-26 87
cagQ YP_003728730.1 cag pathogenicity island protein Q Virulence cag PAI Protein 6e-26 86

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HMPREF4655_21068 YP_005770155.1 cag pathogenicity island protein VFG0294 Protein 1e-27 87