Gene Information

Name : HMPREF4655_21066 (HMPREF4655_21066)
Accession : YP_005770153.1
Strain : Helicobacter pylori 35A
Genome accession: NC_017360
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1050381 - 1050725 bp
Length : 345 bp
Strand : +
Note : -

DNA sequence : 
ATGAAACAACCGATTAGCAAATTAAAACAAAACTTCTTACAATTCAAACATTCTTTCAACAAACATTTAGATAAGTACAG
CCTTTATTATAGGCTGTTCAATATCAGCTCTATCGTTATAGGTTTTTTAATAGGGCTTTTTTCTTATGGGGCAGGGGTGA
TTTTAGTTTATCCAATATTATTCTTATTTGCTCTTATAATAAAACCTAGCTTTTTTTATTACACTACTTATCTTTTGCTA
CTCGTTTCTCTCAGCGTAATAAGCAAATACTATCTCTTAAACCATGCAAATTTCACAATGAAGCTAATCATACTTATGAC
TCAATGGCAAAATTGGTTCTTGTAA

Protein sequence : 
MKQPISKLKQNFLQFKHSFNKHLDKYSLYYRLFNISSIVIGFLIGLFSYGAGVILVYPILFLFALIIKPSFFYYTTYLLL
LVSLSVISKYYLLNHANFTMKLIILMTQWQNWFL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0536 BAD14061.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-33 99
HP0536 BAD13815.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-33 99
HP0536 BAD13897.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-33 99
HP0536 BAD13952.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-33 99
HP0536 BAD14007.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-33 99
HP0536 BAD13788.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-33 99
HP0536 BAD13869.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-33 98
HP0536 BAD13842.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-32 98
HP0536 BAD13979.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-29 97
cag15 AAR03928.1 Cag15 Virulence cag PAI Protein 1e-32 97
cagP AAF80206.1 CagP Virulence cag PAI Protein 7e-30 96
HP0536 BAD14034.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-32 96
HP0536 BAD13924.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-32 96
cagP NP_223202.1 cag island protein Virulence cag PAI Protein 4e-32 96
HP0536 NP_207332.1 cag pathogenicity island protein (cag15) Virulence cag PAI Protein 2e-32 96
cag15 AAR03870.1 Cag15 Virulence cag PAI Protein 7e-32 95
cag15 AAR03959.1 Cag15 Virulence cag PAI Protein 2e-32 95

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HMPREF4655_21066 YP_005770153.1 cag pathogenicity island protein VFG0295 Protein 7e-33 96