Gene Information

Name : HMPREF4655_21064 (HMPREF4655_21064)
Accession : YP_005770151.1
Strain : Helicobacter pylori 35A
Genome accession: NC_017360
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1047891 - 1048811 bp
Length : 921 bp
Strand : -
Note : -

DNA sequence : 
TTGAAAAGTATCTTCAAAAAACTAGGTTCTGTCGCTCTTTATTTTTTAGTTATTTATGGGGGCTTAAACGCTATCAATAC
AGCATTATTACCGAGTGAATACAAAAAATTAGTGGCTTTAGGCTTTAAAAAAATCAAAACATTCCATCAAAGACATGACG
AAAAAGAAGTTACAGAAGAGGAAAAAGAATTCGCCACTAACGCTTTGAGAGAAAAATTACGAAATGATAGGGCGAGAGCG
GAGCAAATTCAAAAGAATATTGAAGCGTTTGAAAAAAAGAACAACTCTTCTATTCAAAAAAAAGCGGCTAAACACAAAGG
ATTACAAGAATTAAACGAAACTAACGCTAACCCTTTGAATGACAACCCTAATAGCAATTCTTCCACTGAAACCAAATCCA
ATAAAGATGATAACTTTGATGAGATGATCAATAAGGTGAATGAAGCTTTTGTGAAACCTGCTGCTCCGCTTGTGCCTAAT
GAGTGGAGAACACCTGAAATTGAAATCATTATCAATGAGTGTATTATTTCAAGCAACGATTACGATGGGTTAAGAAAGTG
TTTGATCAAAGGCATCAAGGATCAAAAAATTCTTGCCCCCTTATTAGAAAAAATTCAAGAAATAGAGACAGAAAATAACA
AGTTTTCTAGACAACACTTGAGTGGTTTAAAACTCGCTCTTAATAACAGCAACAATAGAACCTTTCTTATAGCTTCATGC
GCTATTTGTGAGAAGAGAAAAAAAGAAATGGAGCAAGAAAACAACCACCAAGACACTACAAATGCAAGTGAGTTTGGAGC
TACTGACACAAAAGAAAATGAAGCAAAAGATGCAGCATTCTCAAACAATCGTTCTAAATCTGAACTGCCCAATAGCGTCA
TTAATCAAATAGAACAAAGCATCGCTCATGGAAAAAAATAG

Protein sequence : 
MKSIFKKLGSVALYFLVIYGGLNAINTALLPSEYKKLVALGFKKIKTFHQRHDEKEVTEEEKEFATNALREKLRNDRARA
EQIQKNIEAFEKKNNSSIQKKAAKHKGLQELNETNANPLNDNPNSNSSTETKSNKDDNFDEMINKVNEAFVKPAAPLVPN
EWRTPEIEIIINECIISSNDYDGLRKCLIKGIKDQKILAPLLEKIQEIETENNKFSRQHLSGLKLALNNSNNRTFLIASC
AICEKRKKEMEQENNHQDTTNASEFGATDTKENEAKDAAFSNNRSKSELPNSVINQIEQSIAHGKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0538 BAD14009.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-112 99
cagN YP_005779055.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-112 99
HP0538 BAD13817.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-113 99
cagN YP_005777279.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-112 99
HP0538 BAD14063.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-113 99
cagN YP_005774533.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-113 99
HP0538 BAD13954.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-113 99
HP0538 BAD13844.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-111 99
HP0538 BAD13981.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-111 99
HP0538 BAD13790.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-112 99
HP0538 BAD13899.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-112 99
HP0538 BAD13871.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-111 98
cagN YP_005775738.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-111 98
HP0538 NP_207334.1 cag pathogenicity island protein (cag17) Virulence cag PAI Protein 1e-109 97
cag17 AAR03961.1 Cag17 Virulence cag PAI Protein 3e-109 97
cag17 AAR03872.1 Cag17 Virulence cag PAI Protein 8e-110 97
HP0538 ABC25004.1 cag pathogenicity island protein N Virulence cag PAI Protein 1e-108 96
cagN YP_003728726.1 cag pathogenicity island protein N Virulence cag PAI Protein 3e-108 96
cagN AAF80207.2 CagN Virulence cag PAI Protein 8e-108 95
HP0538 BAD14036.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-108 95
cag17 AAR03930.1 Cag17 Virulence cag PAI Protein 4e-110 95
cag17 AAR03900.1 Cag17 Virulence cag PAI Protein 6e-107 95
HP0538 BAD13926.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-107 94
cagN NP_223204.1 cag island protein Virulence cag PAI Protein 9e-108 94

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HMPREF4655_21064 YP_005770151.1 cag pathogenicity island protein VFG0297 Protein 5e-110 97