Gene Information

Name : HMPREF4655_21062 (HMPREF4655_21062)
Accession : YP_005770149.1
Strain : Helicobacter pylori 35A
Genome accession: NC_017360
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1045953 - 1047098 bp
Length : 1146 bp
Strand : +
Note : -

DNA sequence : 
GTGAAATGTTTTTTAAGCATATTTTCTTTCTTAACTTTTTGTAGTTTATCTCTGAATGGTGCAGAGGCAGTAATAACGCT
TGAACCTGCCTTAAAAGCCATTCAAGCGGATGCACAAGCCAAACAAAAAACCGCTCAAGCCGAATTAAAAGCCATAGAGG
CTCAATCTAGTGCCAAAGAAAAAGCCATTCAAGCGCAAATAGAGGGACAATTGAGAACTCAGCTTGCAACTATGAGTGCT
ATGTTAAAAGGGGCTAATGGCGTTATTAATGGTGTCAATAGCATGACAGGGGGGTTTTTTGCAGGTTCAGACATCTTGCT
TGGCGTCATGGAAGGGTATTCAAGCGCGCTTAGCGCATTGGGAGGGAATGTCAAAGTGATCGTGGAAAAACAAAAAATTA
ATACCCAAACAGAAATCCAAAACATGCAAATTGCGCTCCAAAAAAATAACGAAATAATCAAGCTCAAAATGAACCAGCAA
AACGCTCTTTTAGAAGCGTTAAAAAACAGCTTTGAACCGAGCGTTACCCTAAAAACACAAATGGAAATGCTTTCTCAAGC
TCTAGGAAGTTCTTCTGACAACGCTAAATACATCGCTTACAATACGATTGGTATCAAGGCGTTTGAAGAAACCTTAAAAG
GTTTTGAAACATGGTTGAAAGTGGCTATGCAAAAAGCAACCCTTATTGACTACAATTCCCTAACAGGTCAGTCTTTGTTT
CAAAGCGTCATCTATGCACCTGCTCTTAGTTTTTTTTCAAGCATGGGTGCACCATTTGGAATCGTTGAAACATTTACTCT
AGCACCCACAAAATGCCCCTATCTTGATGGGCTAAAAATTTCAGCATGCCTTATGGAACAGGTTATTCAGAATTACAGAA
AGATTGTAGCCCTTATTCAAAATAAACTAAATGATGCAGATTTTCAAAATATCGCTTATTTGAATGGGATCAATGAAGAA
ATCAAAACCTTAAAAGGATCAGTAGATTTGAATGCGCTCATAGAAGTTGCTATCTTAAACGCAGAAAATCATTTAAACTA
TATAGAGAATCTTGAAAAAAAAGCCGATCTTTGGGAAGAACAACTGAAATTAGAGAGAGAAACGACAGCAAGAAACATTG
CTAGCTCTAAAGTTATTGTCAAATGA

Protein sequence : 
MKCFLSIFSFLTFCSLSLNGAEAVITLEPALKAIQADAQAKQKTAQAELKAIEAQSSAKEKAIQAQIEGQLRTQLATMSA
MLKGANGVINGVNSMTGGFFAGSDILLGVMEGYSSALSALGGNVKVIVEKQKINTQTEIQNMQIALQKNNEIIKLKMNQQ
NALLEALKNSFEPSVTLKTQMEMLSQALGSSSDNAKYIAYNTIGIKAFEETLKGFETWLKVAMQKATLIDYNSLTGQSLF
QSVIYAPALSFFSSMGAPFGIVETFTLAPTKCPYLDGLKISACLMEQVIQNYRKIVALIQNKLNDADFQNIAYLNGINEE
IKTLKGSVDLNALIEVAILNAENHLNYIENLEKKADLWEEQLKLERETTARNIASSKVIVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0540 BAD14038.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-158 98
HP0540 BAD13956.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-159 98
HP0540 BAD13846.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-157 98
cagI YP_005779053.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-157 98
HP0540 BAD13792.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-157 98
cag19 AAR03963.1 Cag19 Virulence cag PAI Protein 2e-157 97
HP0540 BAD13901.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-156 97
cagI NP_223206.1 cag island protein Virulence cag PAI Protein 2e-157 97
HP0540 BAD13873.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-157 97
cag19 AAR03902.1 Cag19 Virulence cag PAI Protein 6e-157 97
cagI YP_005775740.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-157 97
cagI AGC69802.1 cag pathogenicity island protein I Virulence cag PAI Protein 6e-157 97
HP0540 NP_207336.1 cag pathogenicity island protein (cag19) Virulence cag PAI Protein 2e-157 97
HP0540 BAD14011.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-157 97
cag19 AAR03874.1 Cag19 Virulence cag PAI Protein 4e-157 97
cagI AAF80208.1 CagI Virulence cag PAI Protein 4e-157 97
HP0540 BAD14065.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-156 97
cagI YP_005777281.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-156 97
HP0540 BAD13819.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-156 97
cagI YP_003728724.1 cag pathogenicity island protein I Virulence cag PAI Protein 3e-157 97
HP0540 BAD13983.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-153 96
HP0540 BAD13928.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-156 96
cagI YP_005774531.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-150 96
cag19 AAR03932.1 Cag19 Virulence cag PAI Protein 2e-156 96

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HMPREF4655_21062 YP_005770149.1 cag pathogenicity island protein VFG0299 Protein 7e-158 97