Gene Information

Name : HMPREF4655_21061 (HMPREF4655_21061)
Accession : YP_005770148.1
Strain : Helicobacter pylori 35A
Genome accession: NC_017360
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1044830 - 1045942 bp
Length : 1113 bp
Strand : +
Note : -

DNA sequence : 
ATGGCAGGTACACAAGCTATATATGAATCATCTTCTGCAGGCTTCTTATCGGAAATTTCCTCAATTATCTCAAGCACAAG
TGGTGTTGCAGGGCCATTTGCAGGAATAGTAGCGGGTGCTATGTCAGCAGCGATTATTCCTATTGTTGTGGGATTTACTA
ATCCGCAAATGACCGCTATCATGACCCAATACAATCAAAGCATCGCTGAAGCCGTAAGCATGCCTATGAAAGCCGCTAAC
CAACAATACAACCAATTGTATCAAGGTTTTAACGATCAAAGCATGGCTGTGGGGAACAATATCTTAAATATCAGCAAATT
AACAGGGGAATTTAATGCGCAAGGCAACACGCAAGGCGTGCAAATTAGTGCTGTTAATAGTCAGATTGCAAGCATTTTAG
CGAGTAATACGACCCCTAAAAATCCTAGTGCTATTGAAGCTTATGCGACGAATCAAATCGCTGTTCCTAGTGTGCCAACA
ACGGTTGAAATGATGAGCAGTATCTTAGGCAATATTACAAGTGCAGCGCCAAAATACGCCCTAGCCCTACAAGAGCAACT
GCGTTCTCAAGCAAGCAACAGCTCAATGAATGATACAGCCGATTCCCTTGATAGCTGTACCGCTTTAGGTGCGCTTGCTA
GCTCATCAAAAGTGTTTTTTAGTTGCATGCAAATTTCTATGACTCCTATGAGTGTCTCTATGCCCACTGTTTATGCCAAA
TACCAAGCGTTGGTCGCTAATGCCCTAACTTCAGGCGTTAATCCTATGACCACTCCTGCATGCCCTATTGGGGACAAAGT
TCTTGCCGTTTATTGCTATGCTGAAAAAGTAGCAGAAATTTTGAGAGAATACTATATAGAATTTGTGAAAAACAATACCA
ATTTGTTGCAAAACGCTTCTCAAATGATACTTAATCAATCAGGATTAGCTACTAGCACCTATGACACTCAAGCGATTTCT
AACATAAGCTCGCTATATAATTACAATATAGTAGCGAATAAATCTTTTTTAAAATCGCATTTGACTTATCTTGATTACGT
CAAAGACAAACTTAAGGGGCAAAAAGATAGCTACTTAACAGAAAGGGTGCAAACTAAAATAATCGTGAAGTGA

Protein sequence : 
MAGTQAIYESSSAGFLSEISSIISSTSGVAGPFAGIVAGAMSAAIIPIVVGFTNPQMTAIMTQYNQSIAEAVSMPMKAAN
QQYNQLYQGFNDQSMAVGNNILNISKLTGEFNAQGNTQGVQISAVNSQIASILASNTTPKNPSAIEAYATNQIAVPSVPT
TVEMMSSILGNITSAAPKYALALQEQLRSQASNSSMNDTADSLDSCTALGALASSSKVFFSCMQISMTPMSVSMPTVYAK
YQALVANALTSGVNPMTTPACPIGDKVLAVYCYAEKVAEILREYYIEFVKNNTNLLQNASQMILNQSGLATSTYDTQAIS
NISSLYNYNIVANKSFLKSHLTYLDYVKDKLKGQKDSYLTERVQTKIIVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cagH YP_005777282.1 cag island protein Virulence cag PAI Protein 2e-159 99
HP0541 BAD13847.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-159 99
HP0541 BAD14066.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-159 99
cagH YP_005774530.1 cag island protein Virulence cag PAI Protein 1e-158 99
HP0541 BAD13957.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-159 99
HP0541 BAD13984.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-158 98
cagH AAC44699.1 CagH Virulence cag PAI Protein 8e-160 98
cagH AGC69803.1 cag pathogenicity island protein H Virulence cag PAI Protein 2e-158 98
HP0541 BAD13820.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-157 98
cagH YP_005775741.1 cag island protein Virulence cag PAI Protein 2e-157 98
HP0541 BAD13929.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-158 98
HP0541 NP_207337.1 cag pathogenicity island protein (cag20) Virulence cag PAI Protein 9e-158 98
cag20 AAR03875.1 Cag20 Virulence cag PAI Protein 1e-158 98
HP0541 BAD13874.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-157 98
cagH YP_003728723.1 cag pathogenicity island protein H Virulence cag PAI Protein 6e-158 98
cag20 AAR03933.1 Cag20 Virulence cag PAI Protein 1e-158 98
cag20 AAR03964.1 Cag20 Virulence cag PAI Protein 2e-157 98
cagH YP_005779052.1 cag island protein Virulence cag PAI Protein 5e-158 98
cag20 AAR03903.1 Cag20 Virulence cag PAI Protein 1e-158 98
HP0541 BAD14012.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-158 98
HP0541 BAD13793.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-158 98
HP0541 BAD13902.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-158 98
HP0541 BAD14039.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-157 97
cagH NP_223207.1 cag island protein Virulence cag PAI Protein 2e-158 97

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HMPREF4655_21061 YP_005770148.1 cag pathogenicity island protein VFG0300 Protein 4e-158 98