Gene Information

Name : HMPREF4655_21060 (HMPREF4655_21060)
Accession : YP_005770147.1
Strain : Helicobacter pylori 35A
Genome accession: NC_017360
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1044400 - 1044828 bp
Length : 429 bp
Strand : +
Note : -

DNA sequence : 
ATGAAAACGAATTTTTATAAAATTAAATTACTATTTGCTTGGTGTCTTATCATTGGCATGTTTAACGCTCCGCTTAACGC
TGACCAAAACACTGATATAAAAGATATTAGTCCTGAAGATATGGCACTAAATAGCGTGGGGCTTGTTTCTAGAGATCAGC
TAAAAATAGAGATCCCTAAAGAAACCCTAGAGCAAAAAGTGGCCATACTCAATGACTATAATGATAAGAATGTTAATATC
AAGTTTGATAACATAAGTTTAGGGAGTTTTCAACCTAATGATAATCTAGGTATCAATGCGATGTGGGGCATTCAAAATCT
TCTCATGAGCCAAATGATGGGCGATTACGGTCCAAACAATCCTTTTATGTATGGTTATGCACCAACATATCCAGATTCAT
CGTTTTTACCACCATTAGGGGGGTTTTAA

Protein sequence : 
MKTNFYKIKLLFAWCLIIGMFNAPLNADQNTDIKDISPEDMALNSVGLVSRDQLKIEIPKETLEQKVAILNDYNDKNVNI
KFDNISLGSFQPNDNLGINAMWGIQNLLMSQMMGDYGPNNPFMYGYAPTYPDSSFLPPLGGF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0542 BAD13875.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-62 100
HP0542 BAD13903.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-62 100
cagG YP_005775742.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-61 100
HP0542 BAD13794.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-60 99
HP0542 BAD13848.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-60 99
HP0542 BAD13958.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-60 99
cagG YP_005779051.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-60 99
HP0542 BAD14067.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-61 99
cagG YP_005774529.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-60 99
HP0542 BAD13821.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-61 99
cagG YP_005777283.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-60 99
HP0542 BAD14013.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-60 99
cagG YP_003728722.1 cag pathogenicity island protein G Virulence cag PAI Protein 6e-61 98
HP0542 NP_207338.1 cag pathogenicity island protein (cag21) Virulence cag PAI Protein 1e-59 97
HP0542 BAD13930.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-60 97
cag21 AAR03965.1 Cag21 Virulence cag PAI Protein 2e-59 96
HP0542 BAD13985.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-59 96
cag21 AAR03934.1 Cag21 Virulence cag PAI Protein 1e-59 96
cag21 AAR03876.1 Cag21 Virulence cag PAI Protein 1e-59 96
cagG AAC44700.1 CagG Virulence cag PAI Protein 1e-59 96
cag21 AAR03904.1 Cag21 Virulence cag PAI Protein 9e-60 96
cagG NP_223208.1 cag island protein Virulence cag PAI Protein 7e-59 95
HP0542 BAD14040.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-59 95

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HMPREF4655_21060 YP_005770147.1 cag pathogenicity island protein VFG0301 Protein 4e-60 97