Gene Information

Name : HMPREF4655_21057 (HMPREF4655_21057)
Accession : YP_005770144.1
Strain : Helicobacter pylori 35A
Genome accession: NC_017360
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1039936 - 1040577 bp
Length : 642 bp
Strand : +
Note : -

DNA sequence : 
GTGGAGGAGCTAGCTAAATTGATCAACAATAATAGCAATAAAAAAATAAGAGACTTTTTTTTGAAAGTTCTCTTAAGTCT
CGTTGTTTTCAGTTCGTATGGGTTGGCAAATGATGATAATCAAGCGAAAAAAGAAGCGTTAGAAAAAGAAAAAAACACTC
CCAATGGGCGTGTTTATACGAATTTAGATTTTGATAGTTTCAAGGCGACTATCAAAAATTTGCAAGACAAGAAAGTAACT
TTCAAAGAAATCAATCCCGATATTATCAAAGATGAAGTTTTTGATTTCGTGATTGTCAATAGAGTCCTTAAAAAAATAAA
GGATTTGAAGCATTACGATCCAATTATTGAAAAAATCTTTGATGAAAAGGGTAAAGAAATGGGGTTGAATGTGGAATTGC
AGATCAATCCTGAAGTGAAAGACTTTTTCACTTTCAAAAGCATCAGCACGACCAACAAACAACGCTGCTTCCTGTCATTG
CACGGAGAAACAAGAGAAATTCTATGCGATGATAAGCTATATAACGTTTTATTGGCCGTATTCAATTCTTATGACCCTAA
TAATCTTTTGAAACATATTAGCGCTATAGAGTCTCTCAAAAAAATCTTTTATACGATTACATGTGAAGCGGTATATCTAT
AA

Protein sequence : 
MEELAKLINNNSNKKIRDFFLKVLLSLVVFSSYGLANDDNQAKKEALEKEKNTPNGRVYTNLDFDSFKATIKNLQDKKVT
FKEINPDIIKDEVFDFVIVNRVLKKIKDLKHYDPIIEKIFDEKGKEMGLNVELQINPEVKDFFTFKSISTTNKQRCFLSL
HGETREILCDDKLYNVLLAVFNSYDPNNLLKHISAIESLKKIFYTITCEAVYL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0545 BAD14070.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-81 99
HP0545 BAD13797.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-80 98
cagD YP_005779048.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-80 98
cagD YP_005774526.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-80 98
HP0545 BAD13824.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-79 97
HP0545 BAD13961.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-80 97
HP0545 BAD13906.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-79 97
HP0545 BAD13851.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-80 96
cag24 AAR03937.1 Cag24 Virulence cag PAI Protein 3e-77 96
cagD NP_223211.1 cag island protein Virulence cag PAI Protein 4e-76 96
HP0545 BAD13988.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-76 95
cagD YP_005777286.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-77 95
cag24 AAR03879.1 Cag24 Virulence cag PAI Protein 5e-79 94
cag24 AAR03907.1 Cag24 Virulence cag PAI Protein 3e-77 94
cagD YP_005775745.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-78 94
cagD YP_003728719.1 cag pathogenicity island protein D Virulence cag PAI Protein 1e-78 94
HP0545 BAD14016.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-77 94
HP0545 BAD13878.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-78 94
HP0545 BAD13933.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-78 94
cagD AAF80210.1 CagD Virulence cag PAI Protein 1e-75 94
HP0545 BAD14043.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-77 93
HP0545 NP_207341.1 cag pathogenicity island protein (cag24) Virulence cag PAI Protein 1e-77 93
cag24 AAR03968.1 Cag24 Virulence cag PAI Protein 2e-76 93

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HMPREF4655_21057 YP_005770144.1 cag pathogenicity island protein VFG0304 Protein 4e-78 93