Gene Information

Name : cagC (HMPREF4655_21056)
Accession : YP_005770143.1
Strain : Helicobacter pylori 35A
Genome accession: NC_017360
Putative virulence/resistance : Virulence
Product : cag island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1039605 - 1039952 bp
Length : 348 bp
Strand : +
Note : -

DNA sequence : 
ATGAAATTTTTTACAAAAATCACTGACAGCTACAAGAAAGTTGTAGTAACTTTAGGGCTAGTGATAACAACCAATCCTTT
AATGGCGGTCACTAGTCCTGCAACAGGCGTTACTGAGACTAAATCTTTGGTTGTTCAGATCATTTCTGTTTTAGCGATCG
TAGGTGGTTGCGCTCTAGGGGTCAAAGGCATAGCAGATATTTGGAAAATCTCTGATGACATCAAAAGAGGTCAGGCAACT
GTTTTTGCTTATGCGCAACCCATAGCTATGTTAGCGGTGGCAGGCGGTATTATCTATTTGAGCACTAAGTTTGGCTTCAA
TATTGGCGAGGGTGGAGGAGCTAGCTAA

Protein sequence : 
MKFFTKITDSYKKVVVTLGLVITTNPLMAVTSPATGVTETKSLVVQIISVLAIVGGCALGVKGIADIWKISDDIKRGQAT
VFAYAQPIAMLAVAGGIIYLSTKFGFNIGEGGGAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cagC NP_223212.1 cag island protein Virulence cag PAI Protein 3e-41 97
cagC AGC69805.1 cag pathogenicity island protein C Virulence cag PAI Protein 1e-46 97
cag25 AAR03938.1 Cag25 Virulence cag PAI Protein 3e-41 96
HP0546 BAD13907.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-46 96
cag25 AAR03908.1 Cag25 Virulence cag PAI Protein 2e-41 96
HP0546 BAD13879.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-46 96
cagC YP_005774525.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-46 96
HP0546 BAD13962.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-46 96
cagC YP_005775746.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-46 96
HP0546 BAD14071.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-46 96
HP0546 NP_207342.1 cag pathogenicity island protein (cag25) Virulence cag PAI Protein 9e-41 95
cag25 AAR03880.1 Cag25 Virulence cag PAI Protein 3e-46 95
cagC YP_005777287.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-45 95
HP0546 BAD13934.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-46 95
HP0546 BAD14017.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-46 95
cagC YP_003728718.1 cag pathogenicity island protein C Virulence cag PAI Protein 6e-36 95
cagC AAC44704.1 CagC Virulence cag PAI Protein 2e-40 94
cagC YP_005779047.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-45 94
HP0546 BAD13798.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-46 94
HP0546 BAD13989.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-46 94
HP0546 BAD13852.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-40 94
cag25 AAR03969.1 Cag25 Virulence cag PAI Protein 4e-40 94
HP0546 BAD14044.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-46 93
HP0546 BAD13825.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-45 93

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cagC YP_005770143.1 cag island protein VFG0305 Protein 2e-41 95