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Name : HPCU_03005 (HPCU_03005) Accession : YP_005766675.1 Strain : Helicobacter pylori Cuz20 Genome accession: NC_017358 Putative virulence/resistance : Virulence Product : cag pathogenicity island protein (cagA, cag26) Function : - COG functional category : - COG ID : - EC number : - Position : 596990 - 600400 bp Length : 3411 bp Strand : + Note : - DNA sequence : ATGGCTAACGAAACCATCGATCAAACAGAAAAACTAGATCAAACACCAATCGTTGATAAGAACGATAATAAAGCGATCAA AAATCCCACCAAAAAGAATCAGTTTTTTTCAACTTTTTTTACATCTAGCAAAAAACAATCTTCCGATCTCAAAGAAACGC TCAATCAAGAGCCAAAGCCTAGCGTTGAACAAAATATAGCCACTACCACCACCACCAACATACAAGGTTTACCTGAAGCT AGGGATTTGCTTGATGGAAGGGGTAATTTTCCTAAATTCACTCTCGGTGATATGGAAATGTTGGATGTTGAGGGTATCGC CGACATTGATCCTAATTACAAGTTCAACCAGTTATTGATTCACAATAATGCTCTGTCTTCTATGTTAATGGGGAGTCATA GCAACATAGGACCTGAAAAAGTTTCATTGTTGTATGGGGATAATGGTGGCCCTGAAGCTAGGCATGATTGGAACGCCACC GTTGGTTATAAAAACCAACAAGGCAACAATGTGGCCACACTCATCAATATGCATCTTAAAAACGGCAGTGGGTTAGTCAT AGCGGGTAATGAAGGTGGGATTAACAACCCTAGCTTCTATCTCTACAAAAAAGACCAACTCACAGGCTTGGAACAAGCGT TGAGTCAAGAAGAGATCCAAAACAAAGTGGATTTCATGGAACTTCTTGCACAAAACAGTGCTAGGTTAGATAACTTGAGC GAGAAAGAGAAAGAAAAGTTCCAAACTGAAATTGGAAATTTCCAAAAAGACCCTAAGGCTTATTTAGACACCCTAGGGAG TGATCACATTGCTTTTGTTTCTAAAAAAGACCAAAAGCATTTAGCTTTGGTTACTGAGTTTGGTAATGGGGAATTGAGCT ATACCCTCAAAGATTATGGGAAAGAACAAGATAGAGCTTTAGATAGGGAGATAAAAACCACTCTTCAAGGTAACCTAAAA CATGATGGCGTGATGTTTGTCAATTATTCCAATTTCAAATACACCAACGCCTCCAAGAGTCCTAATGAGGGTATAGGCGC TACGAATGGCGTTTCCCATTTGGAAGCAAATTTTAGCAAGGTAGCTGTCTTTGATTTGCCTAAATTAAATGGTCTCGTTC TCTCTAATCATCCTGTAAGGCAAAATTTAGAGGATAAACTGGCCGCTAAAGGATTGTCCCCAAAAGAAGCTAATAAGCTC GTCAAAGACTTTTTGAACAGTAACAAGGAATTGGTTGGAAAAGTTTCAAGTTTCAATAAAGCTGTAGCTGAAGCTAAAAA TACAGGCAATTATGACGGAGTGAAAAAAGCTCAAAAAGATCTTGAAAAATCTATAAGGAAACGAGAGCATTTAGAGAAAG AAGTAACGAAAAAAATTGAGAGCAAGAGCGGCAACAAAAATAAAATGGAAGCAAAAGCTCAAGCTAACAGCCAAAAAGAT GAGATTTTTGCGCTTATCAATCAAGAGACTCATAAGGAAGCAAGAAATGCCAGTTACGCTCAGAATCTTGAAGGCATCAG GAGGGAATTGTCTGATAAAATTGAAAATATCAACAAGAATTTGAAAGACTTTAATAAATCTTTTGATGCACTCAAAAGTG GCAAAAATAAGGATTTCAGCAAGGTAGAAGAAACGCTAAAAGCCCTTAAAAGCTCGGTGAAAGATTTGGGTATCAATCCA GAATGGATTTCAAAAGTTGAAAACCTTAGTACAGCTTTGAATGAATTTAAAAATGGCAAAAATAAGGATTTCAGCAAGGT AACACAAGCAAAAAGCGACCTTGAAAATTCCATTAAGGATGTGATCATCAATCAAGAAATAACGGATAAAGTTGACAATC TCAATCAGGCTGTATTAGTGGCTAAAACGGCATACAATTTCAGTATGTTAGATCAAGCGCTAGCCGACCTCAAAAACTTC TCAACGGATCAAAAATTGGATCAAAAAAATGAAAGTTTCAATGTTGGAAAAGATTCTGATCTACAAAAATCCGTTAAAAA TGGTGTGAATGGAACCCTAGTCGGTAATGGGTTATCTAAAACAGAAGCCACAACGCTCACCAGAAAAATTTCGGATATTA GGAAAGAATTGAATGAGAAATTTGCAAATTTCAACAAAAATAATGATGGACTCAAAAACAGCGCAGAGCCCATTTACGCT CAAGTTAATAAAAGGAAAACAGGACAAGTAGCTAGCCCTGAAGGGTCCATTTACGATCAAGTTGCTAAAGCGGTAAATGA AAAAATTGACCGACTCAACGAAAAAGCATCAGCAAGTAAAGGAGTGGGCAATTTTAGTGGAGCAGGGCGATTAGATAGCC GTGAACCCATTTACGCTACGATTGATGATTTCGGCGGACCTTCCTCTTTGAAAAGGTATGCTAAAGTTGATGATCTCAGT AAGGTAGGGCTTTCAAGAGAATCAGATAGCCGTGAACCCATTTACGCTACGATTGATGATCTCGGCGGACCTTCCTCTTT GAAAAGGTATGCTAAAGTTGATGATCTCAGTAAGGTAGGGCTTTCAAGAGAATCAGATAGCCGTGAACCCATTTACGCTA CGATTGATGATTTCGGCGGACCTTCCTCTTTGAAAAGGTATGCTAAAGTTGATGATCTCAGTAAGGTAGGGCTTTCAAGA GAATCAGATAGCCATAAACCCATTTACGCTACGATTGATGATCTCGGCGGACCTTCCTCTTTGAAAAGGTATGCTAAAGT TGATGATCTCAGTAAGGTAGGGCTTTCAAGAGAATCAGATAGCCATAAACCCATTTATGTTACGATTGATGATCTCGGCG GACCTTATACTTTGAAAATGTATGTTGAAAGGGAGCAAGAATTGACTCAGAAAATTAGCAATCTCAATCAGGCAGCGTTA GAAGCTAAAGCAAGTTCTTTTTGCAGCCCAAAACAAATGGCACATCTAGAACAAGCGATACAAGGACTCAAAGATTCTAC AAAAAAGAATGTTATGAATCTATGGGTTGAAGATACAAAAAAAGTGTCTCCTAGTTTGCAAGCGAAATTGGACAATTACG CTACTAACAGCCACATACACATTAATAGCAATGTCAAAAATGGAACAGTCAATGAAAAAGCGACCATCATGCTAACGCAA AAAAACCCTGAGTGGCTTAAGCTCGTGAATGATAAGATAGTTGCACATAATGTGGGAAGCACTCCTTTGTCAGATTATGA TAAAATTGGATTCAACCAAAAGGATATGAAAGGTTATTCTGATTCGTTCAAGTTTTCCACCAAGTTGAACAATGCCGCAA AAAACACTAAGTCTGGCTTTGCGCAATTTTTAATCGATTGCATTTCTGCAGGATCTTACAGCCCGAAGAAAGCGGAATAT GAAGATGGAGTTAAAAATATTAATACAAAAAGTGGTTTCCAAAAATCTTAA Protein sequence : MANETIDQTEKLDQTPIVDKNDNKAIKNPTKKNQFFSTFFTSSKKQSSDLKETLNQEPKPSVEQNIATTTTTNIQGLPEA RDLLDGRGNFPKFTLGDMEMLDVEGIADIDPNYKFNQLLIHNNALSSMLMGSHSNIGPEKVSLLYGDNGGPEARHDWNAT VGYKNQQGNNVATLINMHLKNGSGLVIAGNEGGINNPSFYLYKKDQLTGLEQALSQEEIQNKVDFMELLAQNSARLDNLS EKEKEKFQTEIGNFQKDPKAYLDTLGSDHIAFVSKKDQKHLALVTEFGNGELSYTLKDYGKEQDRALDREIKTTLQGNLK HDGVMFVNYSNFKYTNASKSPNEGIGATNGVSHLEANFSKVAVFDLPKLNGLVLSNHPVRQNLEDKLAAKGLSPKEANKL VKDFLNSNKELVGKVSSFNKAVAEAKNTGNYDGVKKAQKDLEKSIRKREHLEKEVTKKIESKSGNKNKMEAKAQANSQKD EIFALINQETHKEARNASYAQNLEGIRRELSDKIENINKNLKDFNKSFDALKSGKNKDFSKVEETLKALKSSVKDLGINP EWISKVENLSTALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQEITDKVDNLNQAVLVAKTAYNFSMLDQALADLKNF STDQKLDQKNESFNVGKDSDLQKSVKNGVNGTLVGNGLSKTEATTLTRKISDIRKELNEKFANFNKNNDGLKNSAEPIYA QVNKRKTGQVASPEGSIYDQVAKAVNEKIDRLNEKASASKGVGNFSGAGRLDSREPIYATIDDFGGPSSLKRYAKVDDLS KVGLSRESDSREPIYATIDDLGGPSSLKRYAKVDDLSKVGLSRESDSREPIYATIDDFGGPSSLKRYAKVDDLSKVGLSR ESDSHKPIYATIDDLGGPSSLKRYAKVDDLSKVGLSRESDSHKPIYVTIDDLGGPYTLKMYVEREQELTQKISNLNQAAL EAKASSFCSPKQMAHLEQAIQGLKDSTKKNVMNLWVEDTKKVSPSLQAKLDNYATNSHIHINSNVKNGTVNEKATIMLTQ KNPEWLKLVNDKIVAHNVGSTPLSDYDKIGFNQKDMKGYSDSFKFSTKLNNAAKNTKSGFAQFLIDCISAGSYSPKKAEY EDGVKNINTKSGFQKS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cagA | AAR03939.1 | CagA | Virulence | cag PAI | Protein | 0.0 | 75 |
| cagA | BAC10423.1 | CagA | Virulence | cag PAI | Protein | 0.0 | 69 |
| HP0547 | BAD13853.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 69 |
| cagA | BAC10430.1 | CagA | Virulence | cag PAI | Protein | 0.0 | 69 |
| cagA | BAC10427.1 | CagA | Virulence | cag PAI | Protein | 0.0 | 68 |
| cagA | BAC10424.1 | CagA | Virulence | cag PAI | Protein | 0.0 | 68 |
| cagA | BAC10422.1 | CagA | Virulence | cag PAI | Protein | 0.0 | 67 |
| HP0547 | BAD13826.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 67 |
| cagA | BAC10429.1 | CagA | Virulence | cag PAI | Protein | 0.0 | 66 |
| HP0547 | BAD13935.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 66 |
