Gene Information

Name : HPCU_02960 (HPCU_02960)
Accession : YP_005766666.1
Strain : Helicobacter pylori Cuz20
Genome accession: NC_017358
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein H
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 588035 - 589027 bp
Length : 993 bp
Strand : -
Note : COG0249 Mismatch repair ATPase (MutS family)

DNA sequence : 
ATGACAGCAGCGATTATTCCTATTGTTGTGGCATTTACTAATCCGCAAATGACCGCTATCATGACCCAATACAATCAGAG
CATCGCTGAAGCCGTAAGCATGCCTATGAAAGCCGCTAACCAACAATACAACCAATTGTATCAAGGTTTTAACGATCAAA
GCATGGCTGTGGGGAACAATATCTTAAATATTAGCAAATTAACAGGGGAATTTAACGCGCAAGGCAACACGCAAGGCGCG
CAAATTGGTGCTGTTAATAGTCAGATTGCAAGCATTTTAGCGAGTAACACTACCCCTAAAAATCCCAGTGCTATTGAAGC
TTATGCGACGAATCAAATCGCTGTTCCTAGTGTGCCAACAACGGTTGAAATGATGAGCGGTATCTTAGGCAATATTACAA
GTGCAGTACCGAAATACGCCCTAGCCCTACAAGAGCAACTGCGTTCTCAAGCAAGCAACAGCTCAATGAATGATACAGCC
GATTCCCTTGATAGCTGTACCGCTTTAGGTGCGCTTGCTAGCTCATCAAAAGTGTTTTTTAGTTGCATGCAAATTTCTAT
GACTCCTATGAGTGTCTCTATGCCCACTGTTTATGCCAAATACCAGGCGTTAGCCACTAATGCCCTAACTTCAGGCGTTA
ATCCTATGACCACTCCTGCATGCCCTACTGGGGACAAAGTTCTTGTCGTTTATTGCTATGCTGAAAAAGTAGCAGAAATT
TTGAGAGAATACTATATAGAATTTGTGAAAAACAATACCAATTTGTTGCAAAACGCTTCTCAAATGATACTTAATCAATC
AGGATTAGCTACTAGCACCTATGACACTCAAGCGATTTCTAACATAAGCTCGCTATATAACTACAATATAGTAGCGAATA
AATCTTTTTTGAAATCGCATCTGACTTATCTTGATTACATCAAAGACAAACTTAAGGGGCAAAAAGATAGCTACCTAACA
GAAAGGGTGCAAACTAAAATAATCGTGAAGTGA

Protein sequence : 
MTAAIIPIVVAFTNPQMTAIMTQYNQSIAEAVSMPMKAANQQYNQLYQGFNDQSMAVGNNILNISKLTGEFNAQGNTQGA
QIGAVNSQIASILASNTTPKNPSAIEAYATNQIAVPSVPTTVEMMSGILGNITSAVPKYALALQEQLRSQASNSSMNDTA
DSLDSCTALGALASSSKVFFSCMQISMTPMSVSMPTVYAKYQALATNALTSGVNPMTTPACPTGDKVLVVYCYAEKVAEI
LREYYIEFVKNNTNLLQNASQMILNQSGLATSTYDTQAISNISSLYNYNIVANKSFLKSHLTYLDYIKDKLKGQKDSYLT
ERVQTKIIVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0541 BAD13847.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-148 99
HP0541 BAD14066.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-148 99
HP0541 BAD13874.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-146 98
cagH YP_005777282.1 cag island protein Virulence cag PAI Protein 1e-146 98
cagH AGC69803.1 cag pathogenicity island protein H Virulence cag PAI Protein 4e-146 98
HP0541 BAD14012.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-146 98
HP0541 BAD13902.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-146 98
cagH YP_005779052.1 cag island protein Virulence cag PAI Protein 1e-145 98
cag20 AAR03903.1 Cag20 Virulence cag PAI Protein 1e-146 98
HP0541 BAD13793.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-146 98
cagH YP_005775741.1 cag island protein Virulence cag PAI Protein 7e-146 98
HP0541 BAD13929.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-147 98
cag20 AAR03875.1 Cag20 Virulence cag PAI Protein 5e-146 98
cagH YP_005774530.1 cag island protein Virulence cag PAI Protein 5e-146 98
cagH AAC44699.1 CagH Virulence cag PAI Protein 1e-147 98
cag20 AAR03933.1 Cag20 Virulence cag PAI Protein 5e-146 98
cagH YP_003728723.1 cag pathogenicity island protein H Virulence cag PAI Protein 3e-146 98
HP0541 BAD14039.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-144 97
HP0541 BAD13820.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-144 97
HP0541 NP_207337.1 cag pathogenicity island protein (cag20) Virulence cag PAI Protein 4e-145 97
HP0541 BAD13957.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-146 97
cag20 AAR03964.1 Cag20 Virulence cag PAI Protein 3e-145 97
cagH NP_223207.1 cag island protein Virulence cag PAI Protein 1e-145 97
HP0541 BAD13984.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-145 97

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPCU_02960 YP_005766666.1 cag pathogenicity island protein H VFG0300 Protein 2e-145 97