|
Name : HPCU_02125 (HPCU_02125) Accession : YP_005766506.1 Strain : Helicobacter pylori Cuz20 Genome accession: NC_017358 Putative virulence/resistance : Unknown Product : transketolase Function : - COG functional category : - COG ID : - EC number : 2.2.1.1 Position : 423778 - 425703 bp Length : 1926 bp Strand : - Note : COG0021 Transketolase DNA sequence : ATGCGATTGAGTAACGCTGACTTAGAACGATTAAAAAGCATGGCCAACACGCTGCGCTTTTTGTGTGCGGACATGATAGA TAAGGCTAATAGCGGGCATCCGGGCGTGTGCTTGGGATTAGCCGATGTGATGGTGGTTTTAAGCTTGCACTTAAACCTAA ACCCCACCAACCCTAAATGGCTCAACAGGGACAGGCTGGTTTTTAGCGGAGGGCATGCGAGCGCGTTAGCGTATAGTTTG TTGCATTTGTGGGGCTTTGATTTGAGCCTAGAAGATTTAAAGCGTTTCAGGCAATTACACTCTAAAACCCCAGGACACCC CGAATTGCACCACACCAAAGGCATTGAGATCACAACCGGGCCTTTGGGGCAAGGTTTTGCTAACGCTGTGGGCTTTAGCA TGGCGAGTCAATACGCTCAAAACCTTTTAGACAAAGAAGCCATTTCTCATAAAGTCTATTGCTTGTGTGGGGATGGGGAT TTGCAAGAAGGCATTAGTTATGAGAGCGCTTCTTTAGCTGGGCACCTCAACTTAAGCAATCTCATTGTGATTTATGACAG CAACCAGATCAGCATTGAAGGCGCTATTAATATTAGTTTTAGCGAACAGGTTAAGATGCGGTTTTTGGCGCAAAATTGGG AAGTGCTAGAATGCGATGGGCATGACTATCAAGCGATTCATAACGCTTTAGAAGAAGCCAAAAAATCCACCAAACCCACG CTTTTAATCGCTCATACGATTATTGGTAAGGGGGCTATTGGCTTAGAGGGGAGTGAAAAAACGCATGGCTCGCCCCTAAA TAAAGAAGTGTTAAAACAATCCAAAGAAAACGCTCAAATCAATCCTGATGAAAGCTTTATCGTTAGCCTAAAAAACAAAA TGCATTTTGAAGAAGTGAAAGTTAGGGGCGTTAGTTTAGAAGCCTTATGGGAAAAATCCTTAAGCCCTAAAACAAAAGAA AAGATCCATGCGTTGAAGGATTTTGATTTTAACGCCATCAATTACCCCACCTTTAAAAAAGACGAATCTCTAGCCACGAG AGTGAGTAACGGCATGATTTTAAACGCTATCGCTAAAGAATGCGAGGGCTTTTTGGGGGGGAGCGCGGATTTAGCCCCGT CCAATAACACGCAATTAAAACACTCTGGCGATTTCCCTTTAGGGCAAAACTTGCATTTTGGGATCAGAGAGCATGCCATG GGGGCTATCACTAACGCTTTAGCGGCGTATGGCTTGTTTGTGCCTTTTTGCGCGACCTTTTTTGTGTTTAGCGATTACTT GATGCCCAGCATTCGTTTGAGCGCTTTAATGAAACTAAAAGCCCTTTTTATCTTTACGCATGACAGCATTGGCGTGGGCG AAGATGGGGCGACGCACCAGCCTGTAGAGCAATTGAGCCATTTACGCGCTTTGCCCAATTTCTACGCTTTCAGACCTAGC GACGCTTTTGAAAATACCGCTTGCATGCAAGTGGCGTTAAGTTTGAGCGCTCCTAGCGGGCTTATTTTATCGCGCCAGAA TTTACCCGTGCTTGATGAGGTTTCTAAAGAGCAGGTTTTAAAAGGTGCGTATGTTAAATATGAGGCTAAAAACCCCGCTA TCACACTGGTTGCGAGCGGGAGCGAAGTTTCTTTAGCTTTAGAGAGCGCTAAAATGTTAGAGCGAGAAAATATCCCCACT CAAGTGGTGAGCGCGCCATGCTTTGATTTATTGGTGGAACAAGATGAAAGCTATCTTAAAGAGCTTTTTAAGGGTAAAGT TTTAGTGATTGAAGCGAGCCGTGCGATAGAGTGGTATCGTTTTGCGGATAAAATCATTGGCATGGATTCTTTTGGGAGCT CAGCAAAGGGCGATAAACTCTTTGAAAAATTCGGCTTCAGCGTTGAAAACATCACCGCTCAAGCTAAAAGGTTACTCCAC GCATGA Protein sequence : MRLSNADLERLKSMANTLRFLCADMIDKANSGHPGVCLGLADVMVVLSLHLNLNPTNPKWLNRDRLVFSGGHASALAYSL LHLWGFDLSLEDLKRFRQLHSKTPGHPELHHTKGIEITTGPLGQGFANAVGFSMASQYAQNLLDKEAISHKVYCLCGDGD LQEGISYESASLAGHLNLSNLIVIYDSNQISIEGAINISFSEQVKMRFLAQNWEVLECDGHDYQAIHNALEEAKKSTKPT LLIAHTIIGKGAIGLEGSEKTHGSPLNKEVLKQSKENAQINPDESFIVSLKNKMHFEEVKVRGVSLEALWEKSLSPKTKE KIHALKDFDFNAINYPTFKKDESLATRVSNGMILNAIAKECEGFLGGSADLAPSNNTQLKHSGDFPLGQNLHFGIREHAM GAITNALAAYGLFVPFCATFFVFSDYLMPSIRLSALMKLKALFIFTHDSIGVGEDGATHQPVEQLSHLRALPNFYAFRPS DAFENTACMQVALSLSAPSGLILSRQNLPVLDEVSKEQVLKGAYVKYEAKNPAITLVASGSEVSLALESAKMLERENIPT QVVSAPCFDLLVEQDESYLKELFKGKVLVIEASRAIEWYRFADKIIGMDSFGSSAKGDKLFEKFGFSVENITAQAKRLLH A |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tktA | AAO17218.1 | TktA | Not tested | tcd island | Protein | 2e-96 | 42 |
| APECO1_2641 | YP_859417.1 | transketolase | Not tested | Not named | Protein | 3e-86 | 41 |
