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Name : HPCU_01285 (HPCU_01285) Accession : YP_005766349.1 Strain : Helicobacter pylori Cuz20 Genome accession: NC_017358 Putative virulence/resistance : Virulence Product : hypothetical protein Function : - COG functional category : - COG ID : - EC number : - Position : 245476 - 247383 bp Length : 1908 bp Strand : + Note : COG3843 Type IV secretory pathway, VirD2 components (relaxase) DNA sequence : ATGGCGTTAGAAAAAAGTTATAAAGACTTTGAAAGCGATGAGCTTTTTGATTATGAGATCATCAAGCCCAAAAAGACGCT TAAGATACAATACACTTATGCTAAACGCTACTATAAAGAAGTGGAAAAGTTTGCTAAAAATTTAACTCAACTTACACAAG AAGAATTTATGCGTTTAAGAGATCCACAAAAACAAGTGGTCATCAAAAACATAGGCAATATGACACGCTTGCATTCAAAA AGGGCGATGGATTATATCGCTAAACATGGTGAGCTAGTGAGAGATGAATTTTTTAATGAAGTTAATTATAATGATATAGC AGAGCAATGGAATGAGCAATTTGAAAAATTATTAGAAAATAAGAGCCGTGTTAAAAATTGCACTTTACATCTAGTGTTTA GCATTGATGAAAATTGTAATGAAAAAAATTTAAAAGCTTTGGAATTAAGCGTGTATCAAACACTCACTAACACGCTAGGT TATGATTATCCTTTTATAATGAAACTCCATACACACCAAAACAATCCGCATGCGCATGTGATTATCAACAAGACTAACAG AATTACCAATAAGCAACTACGCTTTAATTCTAAAGACAGCTGTAAAGAGTTTTACCACACACTAAGAGAAACATTTAAAG ATTATTTATTTGCTAACTCAAAAGGCGAATTGCAATATTCTAACACGCCTAATATTTATAAGGTGATTAAAGACATAGAA ACAGAGTTAGATACGCTAGAAAAACAGGCTAGAAACAATAAGAGTTTTAGGTATGAAAACTATTTCTATAAAGTTTTGGG CAGTGCAACTTCTCAAATAGAAAGCTTGAAAAAAAGAGAAAATGCCCTATCTGATCATTTAGATAGTCTAAAAAGTTTAT TAGAAAAAACACATTGGGAAAAAGAAAAATTCACGCCCCCAATAAATGAAAAAGAACTTAACCAACAACTTAAAGAAATA AAATGGTTAAATAAAGAATCTTTAACCCCCAAAAACACTTATAAAAAAACTCAAAAATTGGTTGTCTGTAAAAGCCCTTT AATAAAAGATTATCTTTATACTACCAAAAAACTTTTTGCCACACAGAAAAAGATTATAGCTTTAGAGAAAGATTATAAAG ATTTAAAAGTCTTGAAGGAAGAATTTAGCAAAGATTTAGAAGCTGATTTATCCCATTCAAAAAAACGCTTTGAGCTTTAC ACTAGACTAAAAAGCATGAGCAAAGTTTTTATAAGCAAAAGCATTGTTAAAAATTTAGAAAAAATTGCTTTAAATTTTAA AAGCGATAGACATAGTATTTCGCAAAGAGCTTTTGAATTTTTTAGGTATATGAATTATCAAAATTTAAGCTTGACTGATA AAGGCAATATGTTTTTAGTGGCTAAGTTTTTTAAAGATAGTGCTTTACTTGTTAATATTGCTAGGTTTGAAATGAAAAAG ATAGATGATAGTGTTAAAAATTCTAACCCACAAGGCAATTTATTAGACAAACAAGCTTGGCTTAATCTTTTAGAACATTT AAAAAGACTTGAAGAGAAAAACTATTGTTTTGCTAAGAAGCGAAAAGAATTCTTAGAAACTAGAGCTATGGAGCTATCAA AAGATTTAAAATTTTTAACACAGGCCAATGAAAATGATTTGCCTATTTATGAAAGAGGGCAAAGGGATAAAATCATTAAA CGCTGTGAAAAATCGCTTAATTTTTTGCAGAAAGAATTACAATGCTTTAAAACCTTATTGAAAAGTGCAAGTATAGCTTT AGAAAACTTGCAAAGCAACCATCAAATCACAGCCGTTACACAAGACACACAAGAAAACACAAACGCACTCAAAAATACCA CTCAAGATTTTAACAAAACTACCAATGAACCCACAAACCCTAACAATAACCATGAAATGGATTTTTAA Protein sequence : MALEKSYKDFESDELFDYEIIKPKKTLKIQYTYAKRYYKEVEKFAKNLTQLTQEEFMRLRDPQKQVVIKNIGNMTRLHSK RAMDYIAKHGELVRDEFFNEVNYNDIAEQWNEQFEKLLENKSRVKNCTLHLVFSIDENCNEKNLKALELSVYQTLTNTLG YDYPFIMKLHTHQNNPHAHVIINKTNRITNKQLRFNSKDSCKEFYHTLRETFKDYLFANSKGELQYSNTPNIYKVIKDIE TELDTLEKQARNNKSFRYENYFYKVLGSATSQIESLKKRENALSDHLDSLKSLLEKTHWEKEKFTPPINEKELNQQLKEI KWLNKESLTPKNTYKKTQKLVVCKSPLIKDYLYTTKKLFATQKKIIALEKDYKDLKVLKEEFSKDLEADLSHSKKRFELY TRLKSMSKVFISKSIVKNLEKIALNFKSDRHSISQRAFEFFRYMNYQNLSLTDKGNMFLVAKFFKDSALLVNIARFEMKK IDDSVKNSNPQGNLLDKQAWLNLLEHLKRLEEKNYCFAKKRKEFLETRAMELSKDLKFLTQANENDLPIYERGQRDKIIK RCEKSLNFLQKELQCFKTLLKSASIALENLQSNHQITAVTQDTQENTNALKNTTQDFNKTTNEPTNPNNNHEMDF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| virD2-1 | YP_002301087.1 | relaxase | Virulence | cag PAI | Protein | 0.0 | 94 |
