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Name : HPCU_07460 (HPCU_07460) Accession : YP_005767540.1 Strain : Helicobacter pylori Cuz20 Genome accession: NC_017358 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : - COG ID : - EC number : 6.1.1.11 Position : 1500460 - 1501707 bp Length : 1248 bp Strand : - Note : COG0172 Seryl-tRNA synthetase DNA sequence : ATGATTGATAAAAAACTTTTATTGCAAGATTTTGAGATGGTGGCTCTTTCTTTAAAAAAGCGTAATAATGCGATGGATGA TGCATTGGAGCGTTTGCGCGAAGTCATCACGCATTATAAAAAGCAACTCATTGAATTAGAAGGCTTGCAAGCCTTTCAAA ACAAGGTTTCTAAAGAATTTGGTATCAAAATGGCTCAAAAAGTGGATACAAGCGATCTCAAAAAAGAGCTAGAAAACAAC AAAATCAAACTGAATGAGCTTTCCAAAAGCGTGGGCGAATTGGAACAACAAATAGATTTAAAGCTTTCAATAATCCCTAA TTTGGTGGATGAAAAAACCCCTTTAGGCACAAGCGAAGAAGACAACATAGAGATTAAAAAAATCTTAACCCCAAGGGTTT TCACTTTCAAACCCAAAGAACATTTTGAACTCGCTCAACAAAATGGCTGGATTGATTTTGAAAGCGGCGTGAAGCTCGCT AAAAGCCGTTTTTCTGTCATTAGGGGTTTTGGGGCTAAAATTTATCGCGCGCTCATCCATTTGATGTTGGATTTTAATGA AAAAAATGGCTTTGAAATCACCTACACGCCGGCGTTGGTGAATGAAAAAATGCTTTTTGGGACCGGGCAATTACCCAAAT TCAAAGAAGATGTTTTCAAAATAGAAAATGAAAATTTGTATCTGATCCCTACCGCTGAAGTAACGCTCACTAATCTATAC AACGATACGATTGTTAGCGTTGAAAAACTCCCTATTAAAATGACCGCGCACACGCCTTGTTTTAGGAGCGAAGCAGGGAG TGCGGGCAAGGACACAAGGGGGATGATAAGACAGCACCAGTTTGATAAAGTGGAGCTAGTGGCTATCACGCACCCTAAAG AAAGCGATGCCATGCAAGAGCATATGCTAGAGAGCGCGAGCGAAATTTTAAAGGCTTTGGAATTACCGCACCGGTTTGTG CAATTGTGCAGCGCGGATTTAGGCTTTAGCGCAAGCAACACGATAGATATTGAAGTGTGGCTTCCTGGGCAAAATTGCTA CAGAGAAATCAGCTCGGTGTCTAACACGAGGGATTTTCAAGCCAGGCGCGCGAAAATCCGCTTCAAAGAAAATCAAAAAA ACCAGTTAGCGCACACCTTAAACGGCTCTTCTTTAGCGGTAGGCAGGACGATGGTCGCTTTAATGGAAAACCACCAGCAA GCGGATGGGAGCATTCATATTCCTAAGGCGTTAGAAAAATACCTTTAA Protein sequence : MIDKKLLLQDFEMVALSLKKRNNAMDDALERLREVITHYKKQLIELEGLQAFQNKVSKEFGIKMAQKVDTSDLKKELENN KIKLNELSKSVGELEQQIDLKLSIIPNLVDEKTPLGTSEEDNIEIKKILTPRVFTFKPKEHFELAQQNGWIDFESGVKLA KSRFSVIRGFGAKIYRALIHLMLDFNEKNGFEITYTPALVNEKMLFGTGQLPKFKEDVFKIENENLYLIPTAEVTLTNLY NDTIVSVEKLPIKMTAHTPCFRSEAGSAGKDTRGMIRQHQFDKVELVAITHPKESDAMQEHMLESASEILKALELPHRFV QLCSADLGFSASNTIDIEVWLPGQNCYREISSVSNTRDFQARRAKIRFKENQKNQLAHTLNGSSLAVGRTMVALMENHQQ ADGSIHIPKALEKYL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 1e-76 | 45 |
