Gene Information

Name : fliP (hp908_0692)
Accession : YP_005765193.1
Strain : Helicobacter pylori 908
Genome accession: NC_017357
Putative virulence/resistance : Virulence
Product : Flagellar biosynthesis protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 681681 - 682433 bp
Length : 753 bp
Strand : +
Note : -

DNA sequence : 
GTGCGTTTTTTCATTTTTTTAATGCTTGCTCTCATTTGCCCTTTAATATGCCCCTTAATGAGCGCTGATAGCGCTTTACC
TAGCGTCAATCTCTCTTTAAACGCTCCTAGTGATCCTAAACAGCTCGTAACCACCCTTAATGTCATCGCCTTACTCACGC
TTTTAGTTTTAGCCCCATCGTTGATTTTAGTGATGACGAGTTTCACCCGTTTGATCGTGGTGTTTTCTTTTTTAAGGACC
GCTTTAGGCACGCAACAAACCCCCCCCACTCAAATTTTAGTCTCGCTCTCTTTGATATTGACTTTTTTTATCATGGAACC
TAGCTTGAAAAAGGCTTATGATACAGGGATCAAGCCTTATATGGATAAAAAGATTTCTTACACCGAAGCGTTTGAAAAAA
GCGCTCTGCCTTTCAAGGAATTCATGCTTAAAAACACACGAGAAAAGGATCTAGCCCTTTTTTTTAGGATTAGGAATTTG
CCTAACCCTAAAACCCCTGATGATGTGAGTTTGAGCGTTTTAATCCCGGCGTTTATGATAAGCGAGTTAAAAACAGCGTT
TCAAATCGGTTTTTTACTCTACTTGCCTTTTTTGGTGATTGATATGGTCATCAGCTCTATTTTAATGGCGATGGGCATGA
TGATGCTCCCGCCTGTAATGATTTCTCTGCCTTTTAAAATTTTAGTGTTTATTCTGGTGGATGGGTTTAATTTATTGACC
GAAAATTTAGTGGCGAGTTTTAAAATGGTTTGA

Protein sequence : 
MRFFIFLMLALICPLICPLMSADSALPSVNLSLNAPSDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRT
ALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNL
PNPKTPDDVSLSVLIPAFMISELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLT
ENLVASFKMV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 8e-26 46
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 1e-25 46
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 1e-25 46
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 6e-25 45
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 6e-25 45
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 2e-21 45
escR AAK26700.1 EscR Virulence LEE Protein 2e-21 45
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 2e-21 45
escR AAL57527.1 EscR Virulence LEE Protein 2e-21 45
escR CAC81847.1 EscR protein Virulence LEE II Protein 2e-21 45
escR CAI43889.1 EscR protein Virulence LEE Protein 2e-21 45
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 2e-21 45
escR AAC31528.1 L0049 Virulence LEE Protein 2e-21 45
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 2e-21 45
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 2e-21 45
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 2e-21 45
escR AAC38369.1 EscR Virulence LEE Protein 8e-21 45
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-22 45
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-22 45
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 9e-23 44
unnamed AAL06354.1 EscR Virulence LEE Protein 5e-21 43
lscR AAO18040.1 LscR Virulence TTSS locus Protein 1e-23 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_005765193.1 Flagellar biosynthesis protein VFG2338 Protein 9e-41 55
fliP YP_005765193.1 Flagellar biosynthesis protein VFG1259 Protein 1e-41 54
fliP YP_005765193.1 Flagellar biosynthesis protein VFG2494 Protein 1e-43 54
fliP YP_005765193.1 Flagellar biosynthesis protein VFG2016 Protein 2e-40 53
fliP YP_005765193.1 Flagellar biosynthesis protein VFG0519 Protein 5e-26 46
fliP YP_005765193.1 Flagellar biosynthesis protein VFG0827 Protein 1e-21 45
fliP YP_005765193.1 Flagellar biosynthesis protein VFG0715 Protein 5e-21 45
fliP YP_005765193.1 Flagellar biosynthesis protein VFG0044 Protein 2e-23 41
fliP YP_005765193.1 Flagellar biosynthesis protein VFG0394 Protein 9e-23 41