Gene Information

Name : hp908_0548 (hp908_0548)
Accession : YP_005765051.1
Strain : Helicobacter pylori 908
Genome accession: NC_017357
Putative virulence/resistance : Virulence
Product : cag island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 527960 - 528307 bp
Length : 348 bp
Strand : -
Note : -

DNA sequence :

ATGAAATTTTTTACAAGAATCACTGACAGCTACAAGAAAGTTGTAGTAACTTTAGGGCTAGCGATAGCAGCCAATCCTTT
AATGGCTGTCAGCAGTCCTGCAACAGGCATTGCCGAGACTAAAACTTTGGTGGTTCAGATCATTTCTGTTCTAGCGATCG
TAGGTGGTTGCGCTCTAGGAGTCAAAGGTATAGCGGATATTTGGAAAATCTCTGATGACATCAAAAGAGGTCAAGCGACT
GTTTTTGCTTACGCGCAGCCCATAGCTATGTTAGCGGTGGCGGGTGGCATTATCTATTTGAGCACTAAGTTTGGCTTCAA
TATTGGCGAAGGCGGAGGAGCTAGCTAA

Protein sequence :

MKFFTRITDSYKKVVVTLGLAIAANPLMAVSSPATGIAETKTLVVQIISVLAIVGGCALGVKGIADIWKISDDIKRGQAT
VFAYAQPIAMLAVAGGIIYLSTKFGFNIGEGGGAS

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
HP0546	BAD14044.1	cag pathogenicity island protein	Virulence	cag PAI	Protein	6e-47	98
HP0546	BAD14071.1	cag pathogenicity island protein	Virulence	cag PAI	Protein	3e-46	94
HP0546	BAD13962.1	cag pathogenicity island protein	Virulence	cag PAI	Protein	1e-46	94
HP0546	BAD14017.1	cag pathogenicity island protein	Virulence	cag PAI	Protein	5e-46	94
cagC	YP_005779047.1	cag pathogenicity island protein	Virulence	cag PAI	Protein	8e-46	93
HP0546	BAD13907.1	cag pathogenicity island protein	Virulence	cag PAI	Protein	1e-45	93
HP0546	BAD13798.1	cag pathogenicity island protein	Virulence	cag PAI	Protein	6e-46	93
cag25	AAR03938.1	Cag25	Virulence	cag PAI	Protein	2e-41	93
cag25	AAR03908.1	Cag25	Virulence	cag PAI	Protein	2e-41	93
cagC	YP_005777287.1	cag pathogenicity island protein	Virulence	cag PAI	Protein	5e-45	93
cagC	YP_005774525.1	cag pathogenicity island protein	Virulence	cag PAI	Protein	1e-45	93
cagC	YP_005775746.1	cag pathogenicity island protein	Virulence	cag PAI	Protein	7e-46	92
HP0546	BAD13934.1	cag pathogenicity island protein	Virulence	cag PAI	Protein	7e-46	92
HP0546	NP_207342.1	cag pathogenicity island protein (cag25)	Virulence	cag PAI	Protein	6e-41	92
cagC	NP_223212.1	cag island protein	Virulence	cag PAI	Protein	4e-41	92
HP0546	BAD13879.1	cag pathogenicity island protein	Virulence	cag PAI	Protein	5e-46	92
cagC	AGC69805.1	cag pathogenicity island protein C	Virulence	cag PAI	Protein	5e-46	92
cag25	AAR03880.1	Cag25	Virulence	cag PAI	Protein	1e-45	91
HP0546	BAD13989.1	cag pathogenicity island protein	Virulence	cag PAI	Protein	4e-45	90
HP0546	BAD13852.1	cag pathogenicity island protein	Virulence	cag PAI	Protein	5e-40	90
cagC	AAC44704.1	CagC	Virulence	cag PAI	Protein	2e-40	90
cag25	AAR03969.1	Cag25	Virulence	cag PAI	Protein	3e-40	90
cagC	YP_003728718.1	cag pathogenicity island protein C	Virulence	cag PAI	Protein	4e-35	89
HP0546	BAD13825.1	cag pathogenicity island protein	Virulence	cag PAI	Protein	7e-44	88

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
hp908_0548	YP_005765051.1	cag island protein	VFG0305	Protein	2e-41	92