Gene Information

Name : hp908_0547 (hp908_0547)
Accession : YP_005765050.1
Strain : Helicobacter pylori 908
Genome accession: NC_017357
Putative virulence/resistance : Virulence
Product : cag island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 527335 - 527958 bp
Length : 624 bp
Strand : -
Note : -

DNA sequence : 
TTGATCAATAATAATAGTAATAAAAAACTGAGAGGCTTTTTTTTGAAAGTTCTCTTAAGTCTCGTTGTTTTCAGTTCGTA
TGGGTCAGCCAATGATGACAAAGAAGCCAAAAAAGAAGCGTTAGAAAAAGAAACAAACACTCCCAATGGGCGTGTTTATA
CGAATTTAGATTTTGATAGTTTCAAAGCGACTATCAAAAATTTGAAAGACAAGAAAGTAACTTTCAAAGAAGTCAATCCC
GATATTATCAAAGATGAAGTTTTTGATTTCGTGATTATCAATAGAGTCCTTAAAAAAATAAAGGATTTGAAGCATTACGA
TCCCGTTATTGAAAAAATCTTTGATGAAAAGGGTAAAGAAATGGGACTGAATGTAGAATTACAGATCAATCCTGAAGTGA
AAGACTTTTTTACTTTCAAAAACATCAGCACGACCAACAAACAACGCTGCTTTCTATCATTGCGCGGGGAAACAAGAGAA
ATTTTATGCGATGATAAGCTATACAATGTCTTATTGGCCGTATTCAATTCTTATGACCCTAATGATCTTTTGAAACATAT
TAGCACCATAGAGTCTCTCAAAAAAATCTTTTATACGATTACATGTGAAGCGGTATATCTATAA

Protein sequence : 
MINNNSNKKLRGFFLKVLLSLVVFSSYGSANDDKEAKKEALEKETNTPNGRVYTNLDFDSFKATIKNLKDKKVTFKEVNP
DIIKDEVFDFVIINRVLKKIKDLKHYDPVIEKIFDEKGKEMGLNVELQINPEVKDFFTFKNISTTNKQRCFLSLRGETRE
ILCDDKLYNVLLAVFNSYDPNDLLKHISTIESLKKIFYTITCEAVYL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cag24 AAR03907.1 Cag24 Virulence cag PAI Protein 4e-74 98
cag24 AAR03968.1 Cag24 Virulence cag PAI Protein 3e-74 98
cag24 AAR03879.1 Cag24 Virulence cag PAI Protein 2e-74 98
cagD NP_223211.1 cag island protein Virulence cag PAI Protein 4e-71 98
cagD YP_003728719.1 cag pathogenicity island protein D Virulence cag PAI Protein 6e-73 98
HP0545 NP_207341.1 cag pathogenicity island protein (cag24) Virulence cag PAI Protein 2e-73 97
HP0545 BAD14043.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-73 97
HP0545 BAD14016.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-74 97
cag24 AAR03937.1 Cag24 Virulence cag PAI Protein 9e-73 97
cagD AAF80210.1 CagD Virulence cag PAI Protein 4e-71 97
cagD YP_005777286.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-72 96
HP0545 BAD13988.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-74 96
HP0545 BAD13933.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-73 96
HP0545 BAD13851.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-73 95
cagD YP_005775745.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-73 95
HP0545 BAD13878.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-73 95
cagD YP_005774526.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-72 94
HP0545 BAD13961.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-73 94
HP0545 BAD13906.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-73 94
HP0545 BAD13824.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-72 94
HP0545 BAD14070.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-72 93
cagD YP_005779048.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-72 93
HP0545 BAD13797.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-72 93

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hp908_0547 YP_005765050.1 cag island protein VFG0304 Protein 8e-74 97