Gene Information

Name : hp908_0543 (hp908_0543)
Accession : YP_005765046.1
Strain : Helicobacter pylori 908
Genome accession: NC_017357
Putative virulence/resistance : Virulence
Product : cag island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 521956 - 522900 bp
Length : 945 bp
Strand : -
Note : -

DNA sequence : 
ATGACCGCTATCATGACCCAATACAATCAAAGCATCGCTGAAGCTGTAAGCGTGCCTATGAAAGCCGCTAACCAACAATA
CAACCAATTGTATCAAGGTTTTAACGATCAAAGCATGGCTGTGGGGAACAATATCTTAAATATCAGCAAATTAACAGGGG
AATTTAACGCGCAAGGCAACACGCAAAGCGCGCAAATTGGTGCTGTCAATAGTCAGATTGCAAGCATTTTAGCGAGTAAC
ACTACCCCTAAAAATCCTAGTGCTATTGAAGCTTATGCGACGAATCAAATCGCTGTTCCTAGCGTGCCAACAACGGTTGA
AATGATGAGCGGTATATTAGGCAATATTACAAGCGCAGCACCAAAATACGCCCTAGCTCTACAAGAACAACTGCGTTCTC
AAGCAAGCAACAGCTCAATGAATGATACAGCCGATTCCCTTGATAGCTGTACCGCTTTAGGTGCACTTGTTGGCTCATCA
AAAGTGTTTTTCAGTTGCATGCAAATTTCTATGACGCCCATGAGCGTTTCTATGCCCACTGTTTATGCCAAATACCAAGC
GTTAGCCACTAATGCCCTAACTTCAGGCGTTAATCCTATGACCACTCCTGCATGCCCTATTGGGGACAAGGTTCTTGCCG
TTTATTGCTATGCTGAAAAAGTAGCAGAAATTTTGAGAGAATACTACATAGAATTTGTGAAAAACAATACCAATTTGTTG
CAGAACGCTTCTCAAATGATACTCGGTCAATCAGGATTAGCTACTAGCACCTATGACACTCAAGCGATTTCTAACATAAG
CTCGCTATATAATTACAATATAGTAGCGAATAAATCTTTTTTGAAATCGCATTTGACTTACCTTGATTACATCAAAGACA
AGCTTAAGGGGCAAAAAGATAGCTACTTAACAGAAAGGGTGCAAACTAAAATAATCGTGAAGTGA

Protein sequence : 
MTAIMTQYNQSIAEAVSVPMKAANQQYNQLYQGFNDQSMAVGNNILNISKLTGEFNAQGNTQSAQIGAVNSQIASILASN
TTPKNPSAIEAYATNQIAVPSVPTTVEMMSGILGNITSAAPKYALALQEQLRSQASNSSMNDTADSLDSCTALGALVGSS
KVFFSCMQISMTPMSVSMPTVYAKYQALATNALTSGVNPMTTPACPIGDKVLAVYCYAEKVAEILREYYIEFVKNNTNLL
QNASQMILGQSGLATSTYDTQAISNISSLYNYNIVANKSFLKSHLTYLDYIKDKLKGQKDSYLTERVQTKIIVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0541 BAD13793.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-139 99
cag20 AAR03875.1 Cag20 Virulence cag PAI Protein 6e-140 99
cag20 AAR03933.1 Cag20 Virulence cag PAI Protein 6e-140 99
cagH AGC69803.1 cag pathogenicity island protein H Virulence cag PAI Protein 6e-140 99
HP0541 BAD13957.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-140 99
cagH YP_005779052.1 cag island protein Virulence cag PAI Protein 2e-139 99
cag20 AAR03903.1 Cag20 Virulence cag PAI Protein 3e-140 99
cagH NP_223207.1 cag island protein Virulence cag PAI Protein 3e-140 99
HP0541 BAD13929.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-140 99
cagH YP_003728723.1 cag pathogenicity island protein H Virulence cag PAI Protein 2e-140 99
cagH AAC44699.1 CagH Virulence cag PAI Protein 8e-141 99
HP0541 BAD14039.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-138 98
cagH YP_005774530.1 cag island protein Virulence cag PAI Protein 5e-138 98
HP0541 BAD13902.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-138 98
HP0541 NP_207337.1 cag pathogenicity island protein (cag20) Virulence cag PAI Protein 2e-138 98
HP0541 BAD13820.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-138 98
cagH YP_005775741.1 cag island protein Virulence cag PAI Protein 2e-138 98
cagH YP_005777282.1 cag island protein Virulence cag PAI Protein 1e-138 98
cag20 AAR03964.1 Cag20 Virulence cag PAI Protein 2e-138 98
HP0541 BAD14066.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-138 98
HP0541 BAD13847.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-138 98
HP0541 BAD13874.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-138 98
HP0541 BAD14012.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-137 98
HP0541 BAD13984.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-138 97

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hp908_0543 YP_005765046.1 cag island protein VFG0300 Protein 9e-139 98