Gene Information

Name : hp908_0542 (hp908_0542)
Accession : YP_005765045.1
Strain : Helicobacter pylori 908
Genome accession: NC_017357
Putative virulence/resistance : Virulence
Product : cag island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 520800 - 521873 bp
Length : 1074 bp
Strand : -
Note : -

DNA sequence : 
ATGACGCTTGAACCTGCCTTAAAAGCCATTCAGGCGGACGCACAAGCCAAACAAAAAACCGCTCAAGCCGAATTAAAAGC
CATAGAGGCTCAGTCTAGTGCCAAAGAAAAAGCCATTCAAGCGCAGATAGAGGGAGAATTGAGGACTCAGCTTGCAACCA
TGAGCGCTATGTTAAAAGGGGCTAATGGCGTTATTAATGGTGTCAATGGCATGACAGGGGGTTTTTTTGCAGGTTCAGAC
ATCTTGCTTGGCATCATGGAAGGGTATTCAAGCGCGCTTAGCGCATTGGGGGGGAATGTCAAAATGATCGTGGAAAAACA
AAAAATTAATACCCAAACAGAAATCCAAAACATGCAAATCGCGCTCCAAAAAAATAACGAAATAATCAAGCTCAAAATGA
ATCAGCAAAACGCTCTCTTAGAAGCGTTAAAAAACAGCTTTGAACCGAGCGTTACTCTAAAAACACAAATGGAAATGCTT
TCTCAGGCTCTAGGAAGTTCTTCTGATAACGCTAAATACATCGCTTACAATACGATCGGCATCAAGGCGTTTGAAGAAAC
CTTAGAAGGTTTTGAAACATGGTTGAAAGAGGCTATGAAAAAAGCGACCCTTATTGACTATAATTCCCTAACAGGTCAGG
CTTTGTTTCAAAGCGCCATCTATGCGCCTGCTCTTAGTTTTTTTTCAAGCATGAGCACACCATTTGGAATCGTTGAAACA
TTCACTCTAGTGCCCACAAAATGCCCCTATCTTGATGGGCTAAAAATTTCAGCATGCCTTATGGAACAGGTTATTCAGAA
TTACAGAATGATTGTAGCCCTTATTCAAAATAAACTGAGTGATGCAGATTTTCAAAATATCGCTTATTTGAATGGGATCA
ATGGAGAAATCAAAACCTTAAAAGGATCAGTAGATTTGAACGCGCTCATAGAAGCTGCTATCTTAAACGCAGAAAATCAT
TTAAACTATATAGAAAATCTTGAAAAAAAAGCCGACCTTTGGGAAGAACAACTGAAATTAGAGAGAGAAACGACAGCAAG
AAACATTGCTAACTCTAAAGTTATTGTCAAATGA

Protein sequence : 
MTLEPALKAIQADAQAKQKTAQAELKAIEAQSSAKEKAIQAQIEGELRTQLATMSAMLKGANGVINGVNGMTGGFFAGSD
ILLGIMEGYSSALSALGGNVKMIVEKQKINTQTEIQNMQIALQKNNEIIKLKMNQQNALLEALKNSFEPSVTLKTQMEML
SQALGSSSDNAKYIAYNTIGIKAFEETLEGFETWLKEAMKKATLIDYNSLTGQALFQSAIYAPALSFFSSMSTPFGIVET
FTLVPTKCPYLDGLKISACLMEQVIQNYRMIVALIQNKLSDADFQNIAYLNGINGEIKTLKGSVDLNALIEAAILNAENH
LNYIENLEKKADLWEEQLKLERETTARNIANSKVIVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0540 BAD13928.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-141 99
HP0540 BAD14038.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-138 97
cagI AGC69802.1 cag pathogenicity island protein I Virulence cag PAI Protein 9e-139 97
cagI YP_005775740.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-138 97
HP0540 BAD13873.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-139 97
HP0540 NP_207336.1 cag pathogenicity island protein (cag19) Virulence cag PAI Protein 1e-138 97
cag19 AAR03963.1 Cag19 Virulence cag PAI Protein 7e-139 97
cagI YP_003728724.1 cag pathogenicity island protein I Virulence cag PAI Protein 4e-139 97
cag19 AAR03874.1 Cag19 Virulence cag PAI Protein 2e-138 97
cag19 AAR03902.1 Cag19 Virulence cag PAI Protein 2e-138 97
cagI AAF80208.1 CagI Virulence cag PAI Protein 1e-138 97
cagI NP_223206.1 cag island protein Virulence cag PAI Protein 3e-138 96
HP0540 BAD13956.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-137 96
cag19 AAR03932.1 Cag19 Virulence cag PAI Protein 7e-138 96
HP0540 BAD13983.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-134 96
cagI YP_005774531.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-136 95
HP0540 BAD13792.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-136 95
HP0540 BAD13846.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-136 95
cagI YP_005777281.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-135 95
cagI YP_005779053.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-136 95
HP0540 BAD13819.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-135 95
HP0540 BAD13901.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-135 94
HP0540 BAD14065.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-135 94
HP0540 BAD14011.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-135 94

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hp908_0542 YP_005765045.1 cag island protein VFG0299 Protein 5e-139 97