Gene Information

Name : hp908_0540 (hp908_0540)
Accession : YP_005765043.1
Strain : Helicobacter pylori 908
Genome accession: NC_017357
Putative virulence/resistance : Virulence
Product : cag island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 519089 - 520009 bp
Length : 921 bp
Strand : +
Note : -

DNA sequence : 
TTGAAAAGTATCTTCAAAAAATTAGGTTCTGTCGCTTTTTATTCTTTGGTTATTTATGGGGGCTTAAACGCTATCAATAC
AGCATTATTACCGAGTGAATACAAAGAATTGGTGGCTTTAGGCTTTAAAAAAATCAAAACATTCTATCAAAGACATGACG
ACAAAGAAATTACAAAAGAGGAAAAAGAATTCGCCACTAACGCTTTGAGAGAAAAATTACGGAATGATAGGGCGAGAGCG
GAGCAAATTCAAAAGAATATTGAAGCGTTTGAAAAAAAGAACAACTCTTCTGTTCAAAAAAAAGCGGCTAAGCACAGAGG
ATTGCAAGAATTAAACGAAACTAACGCTAACCCTTTGAATGACAACCCTAATGGCAATTCTCCCACTGAAACCAAATCTA
ATAAAGATGATAATTTTGATGAGATGATCAATAAGGTGAATGAAGCTTTTGTGAAACCTGCTGCTCCGCTTGTACCTGAT
GAGTGGAGAACGCCTGAAATTGAAATCGTTATCAATAAGTGTATTATTTCAAGCAACGATTATGATGGGTTAAGAAAGTG
TTTAATCAAAGACATCAAGGATCAAAAAATTCTTGCCCCCTTATTAGAAAAAATTCAAGAAATAGAGACAGAAAATAACA
AGTTTTCTAGACAACACTTGAGTGGTTTAAAACTCGCTCTTAATAACAGCAACAATAGAACCTTTCTTATAGCTTCGTGC
GCTATTTGTGAGAAGAGAAAAAAAGAAATGGAGCAAGAAAATAACTACCAAGATACTACAAATGCAAGTGAGTTTAGAGC
TACTGATACAAAAGAAAATGAAGCAAAAGATGCAACATTCTCAAACAATCGCTCTAAATCCGAACTGCCCAATAGCGTCA
TTAATCAAATAGAACAAAGCATCGCTCATGGAAAAAAATAG

Protein sequence : 
MKSIFKKLGSVAFYSLVIYGGLNAINTALLPSEYKELVALGFKKIKTFYQRHDDKEITKEEKEFATNALREKLRNDRARA
EQIQKNIEAFEKKNNSSVQKKAAKHRGLQELNETNANPLNDNPNGNSPTETKSNKDDNFDEMINKVNEAFVKPAAPLVPD
EWRTPEIEIVINKCIISSNDYDGLRKCLIKDIKDQKILAPLLEKIQEIETENNKFSRQHLSGLKLALNNSNNRTFLIASC
AICEKRKKEMEQENNYQDTTNASEFRATDTKENEAKDATFSNNRSKSELPNSVINQIEQSIAHGKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0538 BAD13926.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-126 98
cagN AAF80207.2 CagN Virulence cag PAI Protein 4e-119 96
cagN NP_223204.1 cag island protein Virulence cag PAI Protein 7e-119 96
HP0538 BAD13817.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-111 95
cagN YP_005777279.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-111 95
cagN YP_005774533.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-116 95
HP0538 BAD13981.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-116 95
HP0538 NP_207334.1 cag pathogenicity island protein (cag17) Virulence cag PAI Protein 3e-117 95
HP0538 BAD13871.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-117 95
cagN YP_005775738.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-117 95
HP0538 ABC25004.1 cag pathogenicity island protein N Virulence cag PAI Protein 2e-113 95
cagN YP_003728726.1 cag pathogenicity island protein N Virulence cag PAI Protein 5e-117 95
cagN YP_005779055.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-111 94
HP0538 BAD13899.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-111 94
HP0538 BAD14063.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-111 94
HP0538 BAD14009.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-111 94
HP0538 BAD14036.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-116 94
HP0538 BAD13954.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-111 94
HP0538 BAD13844.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-113 94
HP0538 BAD13790.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-111 94
cag17 AAR03961.1 Cag17 Virulence cag PAI Protein 1e-114 94
cag17 AAR03930.1 Cag17 Virulence cag PAI Protein 7e-116 94
cag17 AAR03872.1 Cag17 Virulence cag PAI Protein 4e-116 94
cag17 AAR03900.1 Cag17 Virulence cag PAI Protein 5e-115 93

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hp908_0540 YP_005765043.1 cag island protein VFG0297 Protein 1e-117 95