Gene Information

Name : cag9b (hp908_0533)
Accession : YP_005765036.1
Strain : Helicobacter pylori 908
Genome accession: NC_017357
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 511126 - 512295 bp
Length : 1170 bp
Strand : -
Note : -

DNA sequence : 
ATGTTTAATCTTAAAAGGACTTTTTTAATAACGATCATGAGTTTTTTTCTCATTGTTCCTAATTGGTTGAAAGCTATTGA
TTTGCCCATTGTTTCAAATCTCAAAATTTACCAAACAGTTTATTGCATGCTGATACCGAGTTATGTTTTAACCAACAAAA
GTTTTGCAGATATTTTAACAGGTTACACATCTATTGGCCAATCAGGGAGCGGAAAGAGTTCAGGGCAAGGTGTGATCGAA
GCGCTTAGCACACCATTAGCCACAAGTTTAGCCGCTAGCAATCTGGTGAAATATTTGAACACTTTAGGTCCTTTATGGGG
ATCGGCGTGGGCAAGTGTTGCTACAGCTATACAAGGCTTTGCTCTAACGCCATCAAGTGGCTGTAATTTTGGTTGGAACG
CATTGATAAATAAAAACATAGACATATCCATGGATAGCATGCTAGACAATTTGAGCAACAAGATTCAGAATTTTACCAAA
GGCGGTGTTGAGGACAATGTGAAAGGCAATGTTCTTTTACAAATAATTAGCTCAATAACCGCTCAAGCTTCTACGAATAT
TACAGCTGATGGTTTAATTTGGCTGATTGGCAAAGAATTCACTGCAAATAAACTGCAAAACAACACTACAGCCATGCTTG
CTTTTGCCGCACTAGAATCTGTTGTCAAAGGAGCGGACGCTGCTGTTCTTCCTGCATATGGTGTAGTCAATCTGCCTGAT
ATTATCATAGGGCAAGGGTCATATCTTGATTTTGTTTCTTACCTAATTTATATTGTTTTTGGGATTTTTGTTTTCATTTC
TTTTATGAAATTGAGGGATATTTCAAATGGTATTCAGATTAACATAGGTTTTGAATACATGCGATTTATTGGGGGGACAT
TATTCAAAATGGCGATGGTCTCTTTTATCGCCTATGCAGGTTTTGGTTATCTTTATAAAATCTCTTATTCCATTTATTTT
GGTTTAGCAGGCACTTTTGGGCTGAATCAAGTTCTTTTTTGGGCTTTAGATCTAGTGCTGAATTACACTGTTAATTCAAT
TTTACCTGCGGTAAGAGCTGTTTTTTCTAATGTTGGTAACAACGCTCCTAGTTTGTTACAAGGCTTGCAAGTGGCAGGTT
TTGCCATTTTTGAATTCATTCAAAGCTGCATTAAGGTTTTCAACTTTTGA

Protein sequence : 
MFNLKRTFLITIMSFFLIVPNWLKAIDLPIVSNLKIYQTVYCMLIPSYVLTNKSFADILTGYTSIGQSGSGKSSGQGVIE
ALSTPLATSLAASNLVKYLNTLGPLWGSAWASVATAIQGFALTPSSGCNFGWNALINKNIDISMDSMLDNLSNKIQNFTK
GGVEDNVKGNVLLQIISSITAQASTNITADGLIWLIGKEFTANKLQNNTTAMLAFAALESVVKGADAAVLPAYGVVNLPD
IIIGQGSYLDFVSYLIYIVFGIFVFISFMKLRDISNGIQINIGFEYMRFIGGTLFKMAMVSFIAYAGFGYLYKISYSIYF
GLAGTFGLNQVLFWALDLVLNYTVNSILPAVRAVFSNVGNNAPSLLQGLQVAGFAIFEFIQSCIKVFNF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0529 BAD14028.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-152 97
HP0529 BAD13917.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-152 97
cagW YP_005775732.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-152 97
HP0529 BAD13862.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-152 97
cag9 AAR03922.1 Cag9 Virulence cag PAI Protein 2e-151 96
HP0529 BAD14054.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-151 96
HP0529 BAD13972.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-150 96
orf16 NP_223196.1 cag island protein Virulence cag PAI Protein 1e-150 96
HP0529 BAD13945.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-151 96
cag-W AAF80200.1 Cag-W Virulence cag PAI Protein 1e-150 96
HP0529 BAD13835.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-151 96
cag9 AAR03864.1 Cag9 Virulence cag PAI Protein 1e-150 96
cagW YP_005779061.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-151 96
cagW YP_005777273.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-151 96
HP0529 BAD13781.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-152 96
cagW YP_005774540.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-152 96
HP0529 BAD13890.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-151 96
HP0529 BAD13808.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-151 96
cag9 AAR03892.1 Cag9 Virulence cag PAI Protein 7e-150 96
cagW YP_003728735.1 cag pathogenicity island protein W Virulence cag PAI Protein 2e-149 96
cagW AGC69796.1 cag pathogenicity island protein W Virulence cag PAI Protein 2e-149 96
HP0529 NP_207325.1 cag pathogenicity island protein (cag9) Virulence cag PAI Protein 9e-151 95
HP0529 BAD14000.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-151 95
cag9 AAR03953.1 Cag9 Virulence cag PAI Protein 5e-151 95

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cag9b YP_005765036.1 cag pathogenicity island protein VFG0289 Protein 4e-151 95