Gene Information

Name : HPV225_0541 (HPV225_0541)
Accession : YP_005763472.1
Strain : Helicobacter pylori v225d
Genome accession: NC_017355
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein (cagM)
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 518977 - 520107 bp
Length : 1131 bp
Strand : +
Note : cag16

DNA sequence : 
ATGCTTGCAAAAATCGTTTTTAGCTCATTGGTTGCGTTTGGAGTTTTGTCGGCTAATGTGGAGCAGTTTGGTTCATTTTT
CAACGAGATAAAAAAAGAACAAGAAGAGGTGGCTGCAAAAGAAGACGCTCTTAAGGCCCGCAAAAAGCTCTTAAATAATA
CGCATGATTTCTTAGAAGACTTGATTTTTAGAAAACAAAAAATCAAAGAGCTTGTGGATCATAGAGCTAAAGTTCTTTTA
GATTTAGAAAACAAATACAAAAAAGAAAAAGAGGCTCTAGAGAAAGAGACAAGAGGTAAAATCCTTACTGCTAAGTCAAA
GGCTTATGGGGATCTAGAGCAAGCCTTAAAAGATAACCCTCTCTATAAGAAACTTCTTCCTAACCCTTATGCCTATGTTT
TAAACCAAGAAACATTCACCAAAGAAGATAAGGAGCGTTTGAATTATTACTACCCACAAGTCAAAAACAGCAACATTTTC
AAAAAAACTACCGCTACCACTAAAGATAAGGCTCAGGCTTTGCTTCAAATGGGTGTGTTTTCTTTAGATGAAGAACAAAA
CAAAAAAGCGAGCCGATTAGCTTTATCTTACAAGCAAGCGATTGAAGAATATTCCAATAACATTTCTAATTTATTGAGCA
GAAAAGAATTGGATAATATAGATTATTACTTACAGCTTGAAAGAAACAAGTTTGACTCCAAAGCAAAAGATATCGCTCAA
AAAGCTACTAACACGCTTATTTTTAACTCGGAACGCTTGGCGTTTAGCATGGCGATTGATAAGATCAATGAGAAATACTT
AAGGGGCTATGAGGCTTTTTCTAACTTGTTGAAAAATGTCAAAGATGATGTGGAATTGAATACTCTGACTAAAAACTTTA
CCAATCAAAAATTGAGTTTCGCTCAAAAACAAAAATTGTGTTTGTTGGTTTTAGACAGCTTCAATTTTGATACCCAATCC
AAAAAATCTATATTAAAAAAGACTAATGAATACAATATTTTCGTAGATAGCGATCCTATGATGAGCGACAAAACAACTAT
GCAAAAAGAACACTACAAGATATTTAATTTCTTCAAAACAGTGCTTTCTGCATACCGAAACAATGTTGCCAAGAATAATC
CCTTTGAATAG

Protein sequence : 
MLAKIVFSSLVAFGVLSANVEQFGSFFNEIKKEQEEVAAKEDALKARKKLLNNTHDFLEDLIFRKQKIKELVDHRAKVLL
DLENKYKKEKEALEKETRGKILTAKSKAYGDLEQALKDNPLYKKLLPNPYAYVLNQETFTKEDKERLNYYYPQVKNSNIF
KKTTATTKDKAQALLQMGVFSLDEEQNKKASRLALSYKQAIEEYSNNISNLLSRKELDNIDYYLQLERNKFDSKAKDIAQ
KATNTLIFNSERLAFSMAIDKINEKYLRGYEAFSNLLKNVKDDVELNTLTKNFTNQKLSFAQKQKLCLLVLDSFNFDTQS
KKSILKKTNEYNIFVDSDPMMSDKTTMQKEHYKIFNFFKTVLSAYRNNVAKNNPFE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cagM YP_005775737.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-150 99
HP0537 BAD13953.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-151 99
cagM YP_005777278.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-151 99
HP0537 BAD13843.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-151 99
cagM YP_005779056.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-151 99
HP0537 BAD13898.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-151 99
cagM YP_005774534.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-151 99
HP0537 BAD13789.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-151 99
cagM AAC44695.1 CagM Virulence cag PAI Protein 4e-150 99
cagM NP_223203.1 cag island protein Virulence cag PAI Protein 1e-149 99
cag16 AAR03899.1 Cag16 Virulence cag PAI Protein 4e-150 99
HP0537 BAD13870.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-150 99
HP0537 BAD13980.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-150 98
HP0537 BAD13925.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-149 98
cag16 AAR03960.1 Cag16 Virulence cag PAI Protein 9e-150 98
cag16 AAR03871.1 Cag16 Virulence cag PAI Protein 7e-150 98
cagM AGC69800.1 cag pathogenicity island protein M Virulence cag PAI Protein 6e-150 98
cag16 AAR03929.1 Cag16 Virulence cag PAI Protein 3e-150 98
cagM YP_003728727.1 cag pathogenicity island protein M Virulence cag PAI Protein 8e-150 98
HP0537 BAD14035.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-148 98
HP0537 NP_207333.1 cag pathogenicity island protein (cag16) Virulence cag PAI Protein 8e-150 98
HP0537 BAD14008.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-147 97
HP0537 BAD13816.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-148 97
HP0537 BAD14062.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-142 96

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPV225_0541 YP_005763472.1 cag pathogenicity island protein (cagM) VFG0296 Protein 3e-150 98