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Name : HPV225_0282 (HPV225_0282) Accession : YP_005763222.1 Strain : Helicobacter pylori v225d Genome accession: NC_017355 Putative virulence/resistance : Virulence Product : Chaperone protein clpB Function : - COG functional category : - COG ID : - EC number : - Position : 258866 - 261436 bp Length : 2571 bp Strand : + Note : - DNA sequence : ATGAATTTATTTGAAAAAATGACTGACCAATTGCATGAAACTTTAGACAGCGCGCTCGCTCTAGCTTTACACCATAAAAA CGCTGAAGTAACGCCCTTGCACATGCTTTTTGTCATGCTCAATAACTCCCAAGGCATCCTCATTCAAGCCTTACAAAAAA TGTCTGTGGATATTCAAGCCTTAAGGCTTAGCGTTCAAAGCGAGTTGAATAAGTTTGCTAAAGTTTCACAAATCAACAAG CAAAATATCCAGTTAAACCAAGCTCTAATCCAAAGTTTAGAAAACGCTCAAGGCTTGATGGCTAAAACGGGCGACTCTTT CATCGCTACAGACGTGTATCTTTTGGCGAACATGAGCCTTTTTGAAAGCGTTCTAAAACCTTATTTAGACACTAAGCAAT TGCAAAAAACTTTAGAATCTTTGAGAAAAGGCACAACTATCCAAAGTAAAAACGATGATTCCAATTTGGAAAGTTTGGAA AAATTTGGCATTGATTTGACGCAAAAAGCCTTAGAAAATAAGCTCGATCCGGTGATTGGGAGGGATGAAGAAATCATTCG CATGATGCAAATTTTGATAAGAAAAACAAAAAATAACCCTATTTTACTAGGTGAGCCTGGAGTGGGGAAAACGGCGGTTG TGGAGGGTTTGGCCCAACGCATTGTGAATAAAGAAGTGCCTAAAACGCTTTTAAACAAACGAGTCGTCGCTTTAGATTTA AGCTTATTGGTGGCTGGAGCCAAATACAGAGGCGAGTTTGAAGAGCGTTTGAAAAAGGTGATTGAAGAAGTTAAAAAAAG CGCGAATGTGATTTTATTCATTGATGAAATCCACACGATCGTAGGGGCTGGGGCTAGTGAGGGGGGCATGGATGCGGCTA ATATTTTAAAACCCGCGCTCGCTAGGGGGGAATTGCACACGATTGGAGCGACCACTTTGAAAGAATACCGCAAGTATTTT GAAAAAGACATGGCGTTACAAAGGCGTTTCCAACCCATTTTACTCAATGAGCCTAGCATCAATGAAGCCTTACAGATTTT AAGGGGGTTAAAAGAAACTTTAGAAACGCACCATAATATCACTATCAATGACTCCGCGCTCATAGCGAGCGCCAAACTCT CTAGCCGTTATATCACCGATAGGTTTTTACCCGATAAAGCGATTGATTTGATTGATGAGGGGGCGGCTCAATTAAAAATG CAAATGGAATCCGAGCCGGCAAAGCTCTCTAGCGTTAAGCGCTCCATTCAAAGACTAGAAATGGAAAAACAAGCCCTTGA AATGGAAAAAAAAGAGAGCAATGCCAAACGCATGCAAGAAATCCTTAAAGAATTGAGCGATTTGAAAGAAGAAAAAATCC AATTAGAAGCGCAATTTGAGAACGAAAAAGAAGTGTTTAGAGAAATTTCACGCTTGAAAATGGAAACGGAAAGCTTGAAA AAAGAGGCTGAGAGGTTTAAGCGCAATGGGGATTACCAGCAAGCGGGTGAAATTGAATACTCTAAAATCCCTGAAAATAA AAAGAAAGAAGAAGAATTGCAGCACAAATGGGAAGCGATGCAACAAAACGGGGCGTTATTGCAAAACGCTTTAACCGAAA ACAACATCGCTGAGATCGTGAGCCAATGGACGCATATCCCGGTCCAAAAAATGCTCCAGAGCGAAAAAAATAGGGTTTTA AACATTGAAAGCGAATTGCAAAAAAGAGTGGTGGGGCAAGAAAAAGCGATCAAAGCGATCGCTAAAGCGATTAAAAGGAA TAAGGCTGGGCTTAGCGATAGCAATAAACCCATAGGGAGCTTTCTCTTTTTGGGGCCAACGGGCGTGGGTAAAACCGAGA GCGCTAAAGCTTTGGCGCAATTCTTGTTTGATAGCGATAAAAATCTTATAAGAATTGACATGAGCGAATATATGGAAAAA CATGCCATAAGCCGTCTTATTGGGGCTGCTCCTGGGTATGTGGGCTATGAAGAAGGCGGGCAATTGACCGAAGCGGTGCG CAGAAAACCTTATAGCGTGGTGCTGTTAGATGAAGTGGAAAAAGCCCATCCGGATGTGTTTAATCTTTTGTTGCAGGTTT TAGATGAAGGGCATTTAACCGATAGTAAGGGCGTGAGGGTGGATTTCAAAAACACGATTTTGATTTTAACCAGCAATGTG GCTAGCGGTGCGCTTTTGGAAGAAAATTTGAGTGAAGCCGATAAACAAAAAGCGATCAAAGAGAGTTTGAGGCAATTCTT CAAGCCGGAATTTTTAAACCGCTTAGATGAAATCATCTCCTTTAACGCCCTAGATAGCCATGCTGTCGCTAATATCGTGG GGATTCTCTTTGAAAACATTCAAAAAAAAGCGCTTGAAAGAGGCATTAATATAACCCTAGACGAAGAGGCAAAAGAATTG ATCGCTAAAGCGGGATTTGACAGATTTTATGGCGCTAGACCCTTGAAGCGCGCGCTCTATGAAATGGTAGAAGACAAGCT CGCTGAACTCATTTTAGAGGATAAAATTAAAGAGAATGGCAGCGTGGCGTTTGTGGTAGAAAATAACGAAATTGTGCCTA AGATTAAGTGA Protein sequence : MNLFEKMTDQLHETLDSALALALHHKNAEVTPLHMLFVMLNNSQGILIQALQKMSVDIQALRLSVQSELNKFAKVSQINK QNIQLNQALIQSLENAQGLMAKTGDSFIATDVYLLANMSLFESVLKPYLDTKQLQKTLESLRKGTTIQSKNDDSNLESLE KFGIDLTQKALENKLDPVIGRDEEIIRMMQILIRKTKNNPILLGEPGVGKTAVVEGLAQRIVNKEVPKTLLNKRVVALDL SLLVAGAKYRGEFEERLKKVIEEVKKSANVILFIDEIHTIVGAGASEGGMDAANILKPALARGELHTIGATTLKEYRKYF EKDMALQRRFQPILLNEPSINEALQILRGLKETLETHHNITINDSALIASAKLSSRYITDRFLPDKAIDLIDEGAAQLKM QMESEPAKLSSVKRSIQRLEMEKQALEMEKKESNAKRMQEILKELSDLKEEKIQLEAQFENEKEVFREISRLKMETESLK KEAERFKRNGDYQQAGEIEYSKIPENKKKEEELQHKWEAMQQNGALLQNALTENNIAEIVSQWTHIPVQKMLQSEKNRVL NIESELQKRVVGQEKAIKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFLFDSDKNLIRIDMSEYMEK HAISRLIGAAPGYVGYEEGGQLTEAVRRKPYSVVLLDEVEKAHPDVFNLLLQVLDEGHLTDSKGVRVDFKNTILILTSNV ASGALLEENLSEADKQKAIKESLRQFFKPEFLNRLDEIISFNALDSHAVANIVGILFENIQKKALERGINITLDEEAKEL IAKAGFDRFYGARPLKRALYEMVEDKLAELILEDKIKENGSVAFVVENNEIVPKIK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 1e-139 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| HPV225_0282 | YP_005763222.1 | Chaperone protein clpB | VFG0079 | Protein | 4e-155 | 42 |
| HPV225_0282 | YP_005763222.1 | Chaperone protein clpB | VFG2076 | Protein | 1e-111 | 42 |
