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Name : HPKB_0829 (HPKB_0829) Accession : YP_005762337.1 Strain : Helicobacter pylori 52 Genome accession: NC_017354 Putative virulence/resistance : Virulence Product : glutamine synthetase (glnA) Function : - COG functional category : - COG ID : - EC number : - Position : 875232 - 876677 bp Length : 1446 bp Strand : + Note : Consensus COG by CONSORF: COG0174 DNA sequence : ATGATAGTAAGAACTCAAAATAGTGAAAGCAAGATCAAAGAGTTTTTTGAATTTTGCAAAGAAAATGAAGTGGAATTTGT GGATTTTAGATTCAGCGATATTAAAGGCACTTGGAATCACATCGCTTATTCTTTTGGGGCTTTAACGCATGGCATGTTTA AAGAGGGGATTCCTTTTGATGCGAGTTCTTTTAAGGGCTGGCAAGGCATTGAACACTCCGATATGATTTTAACCCCCGAT TTGGTGCGTTATTTCATTGATCCTTTTAGCGCGGATGTGAGCGTGGTCGTGTTTTGCGATGTGTATGATGTGTATAAAAA CCAGCCTTATGAAAAATGCCCTAGAAGTATCGCTAAAAAAGCCTTACAACATTTAAAAGATTCAGGTTTGGGCGATGTGG CTTATTTTGGCGCAGAAAATGAATTTTTCATCTTTGATTCCATTAAGATTAAAGACGCTTCCAATTCCCAATACTATGAA GTGGATAGCGAAGAGGGCGAATGGAATCGGGATAAGAGCTTTGAAAATGGCGTGAATTTTGGGCATAGACCAGGCAAGCA AGGGGGCTATATGCCTGTGCCGCCAACGGATACGATGATGGATATTCGCACTGAAATTGTGAAAGTCTTAAACCAAGTGG GGTTAGAAACTTTTGTCGTCCATCATGAAGTCGCGCAAGCGCAAGGCGAAGTGGGCGTGAAATTTGGGGATTTGGTGGAA GCCGCTGACAATGTCCAAAAACTCAAATATGTGGTTAAAATGGTCGCTCATTTAAACGGCAAAACCGCCACTTTCATGCC AAAACCTTTATATGGGGATAACGGGAGCGGGATGCACACCCATGTGAGCGTTTGGAAAAACAACGAAAACCTTTTTAGCG GCGAAACTTACAAGGGCTTGAGCGAGTTTGCGTTGCATTTTTTAGGGGGCGTGTTGCGCCACGCTAGAGGGTTAGCCGCT TTCACTAACGCTTCCACTAATTCTTATAAACGCCTAATTCCTGGCTATGAAGCCCCATCTATTTTAACTTATTCGGCTAA CAACAGGAGCGCGAGCGTGCGCATCCCTTATGGGATTTCTAAAAACAGTGCAAGGTTTGAATTCAGGTTTCCTGATAGCT CATCAAACCCCTACTTGGCTTTTGCAGCGATTTTAATGGCGGGTATGGATGGCGTTAAAAACAAGATCGATCCCGGCGAA GCGATGGATATTAACCTTTTCAAATTGACTTTAGATGAAATCAGAGAAAAGGGTATCAAGCAAATGCCTCACACCTTAAG GAGATCGTTAGAAGAAATGCTAGCCGATAAGCAGTATTTAAAAGAGAGTCAGGTCTTTAGCGAAGAATTTATTCAAGCCT ATCAATCTCTTAAATTCAACGCTGAAGTGTTCCCATGGGAGAGCAAACCCCATCCCTTTGAATTTATCACCACTTATTCA TGCTAA Protein sequence : MIVRTQNSESKIKEFFEFCKENEVEFVDFRFSDIKGTWNHIAYSFGALTHGMFKEGIPFDASSFKGWQGIEHSDMILTPD LVRYFIDPFSADVSVVVFCDVYDVYKNQPYEKCPRSIAKKALQHLKDSGLGDVAYFGAENEFFIFDSIKIKDASNSQYYE VDSEEGEWNRDKSFENGVNFGHRPGKQGGYMPVPPTDTMMDIRTEIVKVLNQVGLETFVVHHEVAQAQGEVGVKFGDLVE AADNVQKLKYVVKMVAHLNGKTATFMPKPLYGDNGSGMHTHVSVWKNNENLFSGETYKGLSEFALHFLGGVLRHARGLAA FTNASTNSYKRLIPGYEAPSILTYSANNRSASVRIPYGISKNSARFEFRFPDSSSNPYLAFAAILMAGMDGVKNKIDPGE AMDINLFKLTLDEIREKGIKQMPHTLRRSLEEMLADKQYLKESQVFSEEFIQAYQSLKFNAEVFPWESKPHPFEFITTYS C |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| glnA | YP_003728749.1 | glutamine synthetase | Not tested | cag PAI | Protein | 0.0 | 99 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| HPKB_0829 | YP_005762337.1 | glutamine synthetase (glnA) | VFG1399 | Protein | 4e-89 | 45 |
