Gene Information

Name : HPKB_0819 (HPKB_0819)
Accession : YP_005762327.1
Strain : Helicobacter pylori 52
Genome accession: NC_017354
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein 4
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 865080 - 865589 bp
Length : 510 bp
Strand : -
Note : -

DNA sequence : 
TTGTTTGGGAAATGGATTGGTCTGACTTTACTTCTTAATTCTTTAGCCTATCCATGTCAAAAGGTAACCATCACTTTCAA
GCAATACGAAAATCTCACCCAAATCCGTCAAAAAGGCTGCGACAATGAAGTGGTGTGCAGAACGCTCATTTCTATCGCTT
TATTGGAAAGTTCTTTGGGGTTGAACAACAAGCGCGAAATTTCCCTAAAAGACACTTCCTATTCCATGTTCCACATCACC
CTAAACACCGCTAAAAAATTCTATCCTACCTATTCTAAAACGCTCCTCAAGTTCAAATTGCTTAATGATGTGGGTTTTGC
GATCCAATTAGCCAAACAAATTTTGAAAGAAAATTTTGATTATTACAAACAGAAATATCCCAACAAAAGCGTGTATCAAT
TAGTAGAAATGGCAATAGGCGCTTACAATGGGGGCATGAAACACAACCCTAATGGCACTTATGTGAAAAAATTCCGTTGC
ATTTATTCTCAAGTGCGATATAACGGGTAG

Protein sequence : 
MFGKWIGLTLLLNSLAYPCQKVTITFKQYENLTQIRQKGCDNEVVCRTLISIALLESSLGLNNKREISLKDTSYSMFHIT
LNTAKKFYPTYSKTLLKFKLLNDVGFAIQLAKQILKENFDYYKQKYPNKSVYQLVEMAIGAYNGGMKHNPNGTYVKKFRC
IYSQVRYNG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cag4 YP_003728743.1 cag pathogenicity island protein gamma Virulence cag PAI Protein 3e-74 99
cag4 AGC69794.1 cag pathogenicity island protein 4 Virulence cag PAI Protein 2e-74 99
cag-gamma AAF80194.1 Cag-gamma Virulence cag PAI Protein 6e-73 96
cag4 AAR03855.1 Cag4 Virulence cag PAI Protein 8e-73 96
HP0523 BAD14022.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-73 95
HP0523 BAD13911.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-72 95
cag4 AAR03946.1 Cag4 Virulence cag PAI Protein 2e-72 95
HP0523 BAD13966.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-54 95
HP0523 NP_207319.1 cag pathogenicity island protein (cag4) Virulence cag PAI Protein 2e-71 94
cag4 AAR03915.1 Cag4 Virulence cag PAI Protein 6e-71 93
HP0523 BAD13775.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-71 93
HP0523 BAD13994.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-72 93
cag4 YP_005779067.1 cag island protein Virulence cag PAI Protein 8e-71 93
HP0523 BAD14048.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-70 92
HP0523 BAD13802.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-70 92
cag4 AAR03886.1 Cag4 Virulence cag PAI Protein 3e-65 92
cag4 YP_005777267.1 cag island protein Virulence cag PAI Protein 5e-70 92
cag4 YP_005774546.1 cag island protein Virulence cag PAI Protein 1e-70 92
HP0523 BAD13939.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-70 92
orf9 NP_223190.1 cag island protein Virulence cag PAI Protein 9e-65 91
HP0523 BAD13829.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-69 90
HP0523 BAD13884.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-70 90
HP0523 BAD13856.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-68 89
cag4 YP_005775726.1 cag island protein Virulence cag PAI Protein 2e-68 89

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPKB_0819 YP_005762327.1 cag pathogenicity island protein 4 VFG0283 Protein 6e-72 94