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Name : HPKB_0815 (HPKB_0815) Accession : YP_005762323.1 Strain : Helicobacter pylori 52 Genome accession: NC_017354 Putative virulence/resistance : Virulence Product : conjugation TrbI family protein Function : - COG functional category : - COG ID : - EC number : - Position : 855278 - 860974 bp Length : 5697 bp Strand : + Note : Consensus COG by CONSORF: COG2948 DNA sequence : ATGAATGAAGAAAACGATAAATTTGAAACTTCTAAAAAAACCCAACAACATTCACCCCAAGATTTATCCAATGAAGAAAC AACAGAAGCCAATCACTTTGAAGATTCTTCAAAAGAATCCAAAGAAAGCCCAGATCATCATCTTGACAACCCCACAGAAA CTAAAACCAATTTTGATGAATACGAGTCAGAAGAAACCCAAACTCAAATGGATTTTGGAGGTAATGAAACTTCAGAATCT AGCAATGGCAGTCTAGCAGACAAGTTATTCAAAAAAGCCAGAAAATTAGTTGATGATAAAAGACCTTTCACTCAACAAAA GAATTTAGATGAAGAAATCCAAGAACCGAACGAAGAAGACGATCAAGAAAATAATGGGTATCAAGAAGAAACTCAAATGG ACTTAATTGATGATGAAACTTCTAAAAAAACCCAACAACATTCACCCCAAGATTTATCCAATGAAGAAACAACAGAAGCC AATCACTTTGAAGATTCTTCAAAAGAATCCAAAGAAAGCCCAGATCATCATCTTGACAACCCCACAGAAACTAAAACCAA TTTTGATGAATACGAGTCAGAAGAAACCCAAACTCAAATGGATTTTGGAGGTAATGAAACTTCAGAATCTAGCAATGGCA GTCTAGCAGACAAGTTATTCAAAAAAGCCAGAAAATTAGTTGATGATAAAAGACCTTTCACTCAACAAAAGAATTTAGAT GAAGAAATCCAAGAACCGAACGAAGAAGACGATCAAGAAAATAATGGGTATCAAGAAGAAACTCAAATGGACTTAATTGA TGATGAAACTTCTAAAAAAACCCAACAACATTCACCCCAAGATTTATCCAATGAAGAAACAACAGAAGCCAATCACTTTG AAGATTCTTCAAAAGAATCCAAAGAAAGCCCAGATCATCATCTTGACAACCCCACAGAAACTAAAACCAATTTTGATGAA TACGAGTCAGAAGAAATAACTAACGATTCTAACGATCAAGAGATTATCAAAGGAAGCAAAAAGAAATACATTATTGGTGG CATTGTAGTCGCTGTTCTTATCGTGATTATTTTATTTTCTAGAAGCATTTTTCACTACTTCATGCCTTTGGAAGATAAAA GCTCTCGTTTTAGCAAAGACAGGAATCTTTATGTCAATGATGAAATCCAAATAAGGCAAGAGTATAACCAATTGCTGAAA GAACGGAATGAAAAAGGCAATATGATCGATAAGAATCTTTTCTTCAATGACGATCCCAATAGAACCTTATACAACTATTT AAATATTGCAGAAATTGAGGACAAAAACCCATTGAGAGCCTTTTATGAATGTATCAGTAATGGTGGCAACTATGAAGAAT GTTTGAAGCTTATCAAAGACAAAAAACTTCAAGATCAGATGAAAAAGACTCTAGAGGCTTATAAAGACTGCATCAAAAAT GCCAAAACTGAAGAAGAAAGGATCAAGTGTTTAGATTTAATCAAAGATGAAAACCTGAAAAAAAGCTTACTGAACCAACA AAAAGTTCAAGTAGCGCTAGATTGTTTGAAAAACGCTAAAACCGATGAAGAACGAAACGAGTGCCTAAAACTCATAAATG ACCCTGAGATTAGAGAGAAATTCCGTAAGGAATTAGGGCTTCAAAAAGAGCTTCAAGAGTATAAGGATTGTATCAAAAAC GCCAAAACAGAAGCTGAGAAAAACGAATGCTTGAAAGGCTTGTCTAAAGAAGCTATAGAAAGATTGAAACAGCAAGCGCT AGATTGTTTGAAAAACGCTAAAACCGATGAAGAACGAAACGAATGCTTGAAAAATATTCCCCAAGACTTGCAAAAAGAAC TACTAGCTGATATGAGCGTCAAGGCTTACAAGGATTGCGTATCAAGAGCTAGGAATGAAAAAGAAAAAAAAGAATGCGAA AAATTGCTCACGCCTGAAGCGAAAAAAAAGTTAGAACAACAGGTTCTAGATTGTTTGAAAAACGCTAAAACTGATGAAGA ACGAAAAAAGTGTTTGAAAGATCTCCCTAAAGACTTACAAAGCGATATTTTAGCTAAAGAGAGCGTTAAGGCTTATAAAG ACTGCGTATCTCAAGCCAAAACTGAAGCTGAGAAAAAAGAATGCGAGAAATTGCTCACGCCCGAAGCGAAAAAACTTTTA GAAGAAGAAGCCAAAGAGAGCGTTAAGGCTTACTTGGATTGCGTATCTCAAGCTAGAACTGAAGCTGAGAAAAAAGAATG CGAGAAATTGCTCACCCCTGAAGCGAAAAAAAAGTTAGAAGAAGCTAAAAAAAGCGTTAAGGCTTACTTGGATTGCGTAT CTCAAGCTAGAACTGAAGCTGAGAAAAAAGAATGCGAGAAATTGCTCACCCCTGAAGCGAAAAAACTTTTAGAGCAACAA GTGCTAGATTGTTTGAAAAATGCTAAAACCGATGAAGAACGAAAAAAATGTTTGAAAGATCTCCCTAAAGACTTGCAGAA AAAGGTTTTAGCCAAAGAGAGCGTTAAGGCTTACTTGGATTGCGTATCTCAAGCCAAAACTGAAGCTGAGAAAAAAGAAT GCGAAAAATTACTCACCCCTGAAGCGAAAAAACTCTTAGAAGAAGCCAAAGAGAGTCTGAAAGCTTATAAAGACTGCGTT TCAAGAGCTAGGAATGAAAAAGAGAAAAAAGAATGCGAGAAATTGCTCACCCCTGAAGCGAAAAAACTTTTAGAAGAAGA AGCCAAAGAGAGCGTTAAGGCTTACTTGGATTGCGTATCTCAAGCTAGAACTGAAGCTGAGAAAAAAGAATGCGAGAAAT TGCTCACCCCTGAAGCGAAAAAAAAGTTAGAAGAAGCTAAAAAAAGCGTTAAGGCTTACTTGGATTGCGTATCTCAAGCT AGAACTGAAGCTGAGAAAAAAGAATGCGAGAAATTGCTCACCCCTGAAGCGAGGAAACTCTTAGAGCAAGAAGTTAAGAA GAGCGTTAAGGCTTATTTGGACTGCGTTTCAAGAGCTAGGAATGAAAAAGAAAGAAAAGCTTGCGAGAAACTACTCACCC CTGAAGCGAGAAAAAAGTTAGAAGAAGCTAAAAAAAGCGTTAAGGCTTACTTGGATTGCGTATCTCAAGCTAGAACTGAA GCTGAGAAAAAAGAATGCGAGAAACTACTCACCCCTGAAGCGAGGAAACTCTTAGAGCAAGAAGTTAAGAAGAGCGTTAA GGCTTATTTGGACTGCGTATCAAGAGCTAGGAATGAAAAAGAGAAACAAGAATGCGAGAAATTACTCACGCCTGAAGCGA AGAAATTTTTAGAGCAACAAGCGCTAGATTGTTTGAAAAACGCTAAAACCGAAACTGAGAAAAAAAGGTGTGTCAAAGAT CTCCCTAAAGACTTGCAGAAAAAGGTTTTAGCCAAAGAGAGCGTTAAGGCTTATTTGGACTGCGTTTCAAGAGCTAGGAA TGAAAAAGAAAGAAAAGCTTGCGAGAAACTACTCACCCCTGAAGCGAAAAAGCTTTTAGAAGAAGCTAAAGAGAGTCTTA AAGCTTATAAAGACTGCCTCTCTCAAGCTAGAAATGAAGAAGAAAGAAAAGCTTGCGAGAAATTACTCACGCCTGAAGCG AGGAAACTCTTAGAGCAAGAAGTTAAGAAGAGCGTTAAGGCTTATTTGGATTGCGTTTCAAGAGCTAGAAATGAAAAAGA GAAACAAGAATGCGAGAAATTGCTCACCCCTGAAGCGAGAAAATTCTTAGCGAAGCAAGTGCTAAATTGTTTGGAAAAAG CTGGAAATGAAGAAGAAAGAAAAGCATGTCTTAAAAATCTCCCTAAAGACTTACAGGAAAATGTTTTAGCCAAAGAGAGT CTTAAAGCTTATAAAGACTGCCTCTCTCAAGCTAGAAATGAAGAAGAAAGGAGAGCTTGCGAGAAATTACTCACGCCTGA AGCGAGGAAACTCTTAGAGCAAGAAGTTAAGAAGAGCGTTAAGGCTTATTTGGATTGCGTTTCAAGAGCTAGAAATGAAA AAGAGAAACAAGAATGCGAGAAATTGCTCACCCCTGAAGCGAGAAAATTCTTAGCGAAAGAACTCCAACAAAAAGATAAA GCGATCAAAGATTGCTTGAAAAACGCCGATCCTAACGACAGAGCGGCCATTATGAAGTGTTTGGATGGTTTGAGCGATGA AGAGAAGCTCAAATACCTGCAAGAAGCTAGAGAAAAGGCTGTCTTGGATTGTTTGAAAACGGCTAGGACCGATGAAGAAA AAAGAAAATGTCAAAACCTTTATAGCGATTTGATCCAAGAAATCCAAAATAAAAGGACACAAAGCAAACAAAATCAATTG AGTAAAACAGAAAGATTGCATCAAGCAAGCGAGTGCTTGGATAACTTAGATGACCCTACTGATCAAGAAGCCATAGAGCA ATGTTTAGAGGGCTTGAGCGATAGTGAAAGGGCGCTAATTCTAGGAATTAAACGACAAGCTGATGAAGTGGATCTGATTT ATAGCGATCTAAGAAACCGCAAAACCTTTGATAACATGGCGGCTAAAGGTTATCCGTTGTTGCCAATGGATTTCAAAAAT GGCGGCGATATTGCCACTATTAACGCCACTAATGTTGATGCGGACAAAATAGCTAGCGATAATCCTATTTATGCTTCCAT AGAGCCTGACATTACTAAGCAATACGAAACAGAAAAAACCATTAAGGATAAGAATTTAGAAGCTAAATTAGCTAAGGCTT TAGGTGGCAATAAAAAAGATGACGATAAAGAAAAAAGTAAAAAATCCACAGCAGAATCTAAAGTAGAAAGCAATAAGATA GACAAAGATGTCGCAGAAACTGCCAAGAATATCAGTGAAATCGCTCTTAAGAACAAAAAAGAAAAGAGTGGGGAATTTGT AGATGAAAATGGTAATCCCATTGATGACAAAAAGAAAGCAGAAAAACAAGATGAAACAAGCCCTGTCAAACAGGCCTTTA TAGGCAAGAGTGATCCCACATTTGTTTTAGCGCAATACACCCCTATTGAAATCACTCTGACTTCTAAAGTAGATGCCACT CTCACAGGTATAGTGAGTGGGGTTGTAGCCAAAGATGTATGGAACATGAACGGCACTATGATCTTACTAGACAAAGGCAC TAAGGTGTATGGGAATTATCAAAGCGTGAAAGGTGGCACACCCATTATGACACGCTTAATGATAGTCTTTACTAAAGCCA TTACGCCTGATGGTGTGATAATACCTCTAGCAAACGCTCAAGCAGCAGGTATGCTGGGTGAAGCAGGGGTAGATGGCTAT GTGAATAATCACTTTATGAAGCGCATAGGCTTTGCTGTGATAGCAAGCGTGGTTAATAGCTTCTTACAAACTGCGCCTAT CATAGCTCTAGATAAACTCATAGGCCTTGGCAAAGGTAGAAGTGAAAGGACACCTGAATTTAATTACGCTTTGGGTCAAG CTATCAATGGTAGTATGCAAAGTTCAGCTCAGATGTCTAATCAAATTCTAGGGCAACTGATGAATATCCCCCCAAGTTTT TACAAAAACGAGGGCGATAGTATTAAGATTCTCACAATGGACGATATTGATTTTAGCGGTGTGTATGATGTTAAAATTAC CAACAAATCTGTGGTAGATGAAATTATCAAACAAAGCACTAAAACTTTGTCTAGAGAACATGAAGAAATCACCACAAGCC CCAAAGGTGGCAATTAA Protein sequence : MNEENDKFETSKKTQQHSPQDLSNEETTEANHFEDSSKESKESPDHHLDNPTETKTNFDEYESEETQTQMDFGGNETSES SNGSLADKLFKKARKLVDDKRPFTQQKNLDEEIQEPNEEDDQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEETTEA NHFEDSSKESKESPDHHLDNPTETKTNFDEYESEETQTQMDFGGNETSESSNGSLADKLFKKARKLVDDKRPFTQQKNLD EEIQEPNEEDDQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEETTEANHFEDSSKESKESPDHHLDNPTETKTNFDE YESEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFMPLEDKSSRFSKDRNLYVNDEIQIRQEYNQLLK ERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYKDCIKN AKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQKELQEYKDCIKN AKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADMSVKAYKDCVSRARNEKEKKECE KLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKDLQSDILAKESVKAYKDCVSQAKTEAEKKECEKLLTPEAKKLL EEEAKESVKAYLDCVSQARTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQARTEAEKKECEKLLTPEAKKLLEQQ VLDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKESLKAYKDCV SRARNEKEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQARTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQA RTEAEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKERKACEKLLTPEARKKLEEAKKSVKAYLDCVSQARTE AEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEAKKFLEQQALDCLKNAKTETEKKRCVKD LPKDLQKKVLAKESVKAYLDCVSRARNEKERKACEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEERKACEKLLTPEA RKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKES LKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKELQQKDK AIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQL SKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKN GGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAESKVESNKI DKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDAT LTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGY VNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSF YKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| HP0527 | BAD13998.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 98 |
| HP0527 | BAD14052.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 95 |
| cagY | YP_005774542.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 95 |
| HP0527 | BAD13833.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 95 |
| cagY | YP_005777271.1 | cag pathogenicity island protein Y VirB10-like protein | Virulence | cag PAI | Protein | 0.0 | 95 |
| cagY | AGC69789.1 | cag pathogenicity island protein Y | Virulence | cag PAI | Protein | 0.0 | 94 |
| cagY | AGC69792.1 | cag pathogenicity island protein Y | Virulence | cag PAI | Protein | 0.0 | 94 |
| HP0527 | NP_207323.1 | cag pathogenicity island protein (cag7) | Virulence | cag PAI | Protein | 0.0 | 93 |
| HP0527 | BAD13970.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 93 |
| HP0527 | BAD14026.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 92 |
| cagY | AGC69786.1 | cag pathogenicity island protein Y | Virulence | cag PAI | Protein | 0.0 | 92 |
| HP0527 | BAD13888.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 91 |
| cagY | AGC69787.1 | cag pathogenicity island protein Y | Virulence | cag PAI | Protein | 0.0 | 88 |
| HP0527 | BAD13860.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 86 |
| cagY | YP_005775730.1 | cag pathogenicity island protein Y VirB10-like protein | Virulence | cag PAI | Protein | 0.0 | 86 |
| HP0527 | BAD13806.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 85 |
| cagY | YP_003728737.1 | cag pathogenicity island protein Y | Virulence | cag PAI | Protein | 0.0 | 83 |
| orf13/14 | NP_223194.1 | cag island protein | Virulence | cag PAI | Protein | 0.0 | 81 |
| HP0527 | BAD13779.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 81 |
| cagY | YP_005779063.1 | cag island protein | Virulence | cag PAI | Protein | 0.0 | 81 |
| cagY | AGC69785.1 | cag pathogenicity island protein Y | Virulence | cag PAI | Protein | 0.0 | 80 |
| cagY | AGC69788.1 | cag pathogenicity island protein Y | Virulence | cag PAI | Protein | 0.0 | 80 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| HPKB_0815 | YP_005762323.1 | conjugation TrbI family protein | VFG0287 | Protein | 0.0 | 93 |
