Gene Information

Name : HPKB_0814 (HPKB_0814)
Accession : YP_005762322.1
Strain : Helicobacter pylori 52
Genome accession: NC_017354
Putative virulence/resistance : Virulence
Product : penicillin-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 853695 - 855263 bp
Length : 1569 bp
Strand : +
Note : Consensus COG by CONSORF: COG3504. Candidate starts by CONSORF: 853689,853692,853695

DNA sequence : 
ATGGAGCAGGCATTTTTTAAAAAAATTGTTGGCTGTTTCTGTCTTGGTTATTTATTTTTATCTAGCGTAATAGAAGCAGC
AGCACCTGACATTAAAAATTTTAATCGTGGTAGGGTGAAAGTGGTGAATAAGAAGATTGCTTATTTAGGGGATGAAAAAC
CTATTACGATTTGGACTTCATTAGACAATGTTACTGTGATCCAACTTGAAAAAGATGAAACTATTTCTTACATCACAACA
GGTTTCAATAAAGGTTGGAGTATTGTGCCTAATTCTAATCATATATTCATTCAACCTAAATCGGTAAAAAGTAATCTCAT
GTTTGAAAAAGAAGCAGTGAATTTTGCCCTAATGACAAGAGATTATCAAGAATTTTTAAAAACAAAAAAACTTATCGTAG
ATGCGCCTGACCCTAAAGAATTAGAAGAACAAAAAAAAGCTCTAGAAAAAGAAAAAGAAGCTAAAGAACAGGCGCAAAAA
GCGCAAAAAGATAAAAGAGAAAAAAGAAAAGAAGAGCGTGCAAAAAATAGAGCCAATTTAGAAAATCTCACTAACGCTAT
GAGTAACCCACAAAATTTGAGCAATAACAAAAATCTTAGCGAATTTATCAAGCAACAACGAGAAAATGAATTAGATCAAA
TGGAACGACTAGAGGACATGCAAGAACAGGCTCAAGCTAATGCGCTCAAACAAATTGAAGAACTCAACAAAAAACAAGCT
GAAGAGGCAGTGAAACAAAGAGCCAAGGATAAAATCAATATTAAGACAGATAAGCCTCAAAAAAGCCCTGAGGATAACTC
CATAGAATTATCTCCCAGCGATAGCGCTTGGAGAACTAATCTTGTTGTGCGGACTAATAAAGCCTTGTATCAATTCATTT
TGAGAATAGCTCAAAAAGACAATTTTGCTTCGGCGTATCTAACCGTCAAATTAGAATACCCACAAAGACACGAAGTCTCT
AGCGTTATTGAAGAGGAGTTAAAAAAGAGAGAAGAAGCAAAAAGGCAGAGAGAATTGATCAAGCAAGAAAATCTTAACAC
CACAGCCTACATCAATAGAGTAATGATGGCGAGCAATGAACAGATTATCAACAAAGAAAAAATAAGAGAAGAAAAACAAA
AAATTATTTTAGATCAAGCAAAGGCGCTAGAGACTCAATATGTGCATAATGCATTAAAAAGAAACCCTGTGCCTAGAAAC
TACAATTACTACCTAGCGCCTGAAAAACGCTCTAAGCATATTATGCCCTCTGAAATTTTTGATGATGGCACATTCACTTA
TTTTGGTTTCAAAAACATCACTCTCCAACCTGCTATTTTTGTGGTTCAGCCTGATGGGAAATTAAGCATGACTGATGCTG
CTATTGATCCTAACATGACCAATTCAGGATTGAGATGGTATAGAGTTAATGAAATTGCAGAAAAGTTTAAGCTCATTAAA
GACAAAGCCCTTGTAACAGTAATAAATAAAGGCTATGGGAAAAATCCATTGACAAAAAATTACAATATCAAAAACTATGG
TGAATTGGAGCGTGTGATTAAAAAGCTCCCTCTTGTCAGAGATAAATAA

Protein sequence : 
MEQAFFKKIVGCFCLGYLFLSSVIEAAAPDIKNFNRGRVKVVNKKIAYLGDEKPITIWTSLDNVTVIQLEKDETISYITT
GFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTRDYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQK
AQKDKREKRKEERAKNRANLENLTNAMSNPQNLSNNKNLSEFIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA
EEAVKQRAKDKINIKTDKPQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKDNFASAYLTVKLEYPQRHEVS
SVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNEQIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRN
YNYYLAPEKRSKHIMPSEIFDDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK
DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0528 BAD13834.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0528 BAD13807.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0528 BAD13780.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0528 BAD13889.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
cagX YP_005779062.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
cagX YP_005775731.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
cagX YP_005774541.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0528 BAD13944.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0528 BAD13861.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0528 BAD13916.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
orf15 NP_223195.1 cag island protein Virulence cag PAI Protein 0.0 99
cag-X AAF80199.1 Cag-X Virulence cag PAI Protein 0.0 99
cagX YP_003728736.1 cag pathogenicity island protein X Virulence cag PAI Protein 0.0 99
HP0528 BAD13971.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
cagX AGC69795.1 cag pathogenicity island protein X Virulence cag PAI Protein 0.0 99
cag8 AAR03921.1 Cag8 Virulence cag PAI Protein 0.0 99
cag8 AAR03952.1 Cag8 Virulence cag PAI Protein 0.0 99
HP0528 BAD13999.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0528 BAD14027.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
cag8 AAR03863.1 Cag8 Virulence cag PAI Protein 0.0 99
HP0528 NP_207324.1 cag pathogenicity island protein (cag8) Virulence cag PAI Protein 0.0 99
HP0528 BAD14053.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
cagX YP_005777272.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
cag8 AAR03891.1 Cag8 Virulence cag PAI Protein 0.0 98

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPKB_0814 YP_005762322.1 penicillin-binding protein VFG0288 Protein 0.0 99