Gene Information

Name : HPKB_0808 (HPKB_0808)
Accession : YP_005762316.1
Strain : Helicobacter pylori 52
Genome accession: NC_017354
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein Q
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 847391 - 847771 bp
Length : 381 bp
Strand : -
Note : -

DNA sequence : 
GTGCTCTCTGCTAAAACACGCATTAGAACTCCGATCAAGCAAGAACTTGTGCGACCAAAAATAAAAGGATTGGTTATGGG
AAAAATTTTAGCTTCTTTGTTGGGTGGCGGAACAAATCTTTTTACAGGTTTATCTAGTGATCTGTTTTCTATGATATTAA
ATTTTTTGTTCTTTCTAATGTTAATGATGGGACTTAATGAAATATTAGAGAAGAAATTCAACTTACCCATGGATAATATC
AAGAATTTTATGATGGAAGTGCTGAAGAATGGATTTGGTAGTATGAAAAACATGGGATCTGCTTTGATTGGCAATGGTTT
TAGCAGTAGCAAATCAGAAAAAACCGCTAATAAAATGGGTGTCCCCCAAGTAAAACTTTAG

Protein sequence : 
MLSAKTRIRTPIKQELVRPKIKGLVMGKILASLLGGGTNLFTGLSSDLFSMILNFLFFLMLMMGLNEILEKKFNLPMDNI
KNFMMEVLKNGFGSMKNMGSALIGNGFSSSKSEKTANKMGVPQVKL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0535 BAD13951.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-29 97
HP0535 BAD14033.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-25 86
cagQ AAC44691.1 CagQ Virulence cag PAI Protein 1e-25 86
cag14 AAR03897.1 Cag14 Virulence cag PAI Protein 1e-25 86
cag14 AAR03958.1 Cag14 Virulence cag PAI Protein 1e-25 86
cagQ NP_223201.1 cag island protein Virulence cag PAI Protein 2e-25 86
cag14 AAR03927.1 Cag14 Virulence cag PAI Protein 3e-25 85
cag14 AAR03869.1 Cag14 Virulence cag PAI Protein 2e-25 85
cagQ YP_003728730.1 cag pathogenicity island protein Q Virulence cag PAI Protein 7e-25 85
HP0535 NP_207331.1 cag pathogenicity island protein (cag14) Virulence cag PAI Protein 6e-26 85
HP0535 BAD13868.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-25 85

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPKB_0808 YP_005762316.1 cag pathogenicity island protein Q VFG0294 Protein 2e-26 85