Gene Information

Name : HPKB_0805 (HPKB_0805)
Accession : YP_005762313.1
Strain : Helicobacter pylori 52
Genome accession: NC_017354
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein N
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 843698 - 844618 bp
Length : 921 bp
Strand : -
Note : -

DNA sequence : 
TTGAAAAGTATCTTCAAAAAACTAGGTTCTGTCGCTCTTTATTCTTTAGTTATTTATGGGGGCTTAAACGCTATCAATAC
AGCATTATTACCGAGTGAATACAAAAAATTAGTGGCTTTGGGCTTTAAAAAAATCAAAACATTCCATCAAAGACATGACG
ACGAAGAAATTACAAAAGAGGAAAAAGAATTCGCCACTAACGCTTTGAGAGAAAAATTACGAAATGATAGGGCGAGAGCA
GAGCAAATTCAAAAAAATATTGAAGCGTTTGAAAAAAAGAACAACTCTTCTATTCAAAAAAAAGCGGCTAAACACAAAGG
ATTACAAGAATTAAACGAAATTAACGCTCACCCTTTGAATGACAACCCTAATAGCAATTCTTCCGCTGAAACCAAATCTA
ATAAAGATGATAACTTTGATGAGATGATCAATAAGGTGAATGGAGCTTTTGTGAAACCTGCTGCTCCGCTTGTGCCTGAT
GAGTGGAGAACACCTGAAATTGAAATCATTATCAATGAGTGTATTATTTCAAGCAACGATTACGATGGGTTAAGAAAGTG
TTTGATCAAAGGCATCAAGGATCAAAAAATTCTTGCCCCCTTATTAGAAAAAATTCAAGAAATAGAGACAGAAAATAACA
AGTTTTCTAGACAACACTTGAGTGGTTTAAAACTCGCTCTTAATAACAGCAACAATAGAACCTTTCTTATAGCTTCATGC
GCTATTTGTGAGAAGAGAAAAAAAGAAATGGAGCAAGAAAACAACCACCAAGATACTACAAATGCAAGTGAGTTTGGAGC
TACTGATACAAAAGAAAATGAAGCAAAAGATGCAACATTCTCAAACAACCGCTCTAAATCTGAACTGCCCAATAGCGTCA
TTAATCAAATAGAACAAAGCATCGCTCATGGAAAAAAATAG

Protein sequence : 
MKSIFKKLGSVALYSLVIYGGLNAINTALLPSEYKKLVALGFKKIKTFHQRHDDEEITKEEKEFATNALREKLRNDRARA
EQIQKNIEAFEKKNNSSIQKKAAKHKGLQELNEINAHPLNDNPNSNSSAETKSNKDDNFDEMINKVNGAFVKPAAPLVPD
EWRTPEIEIIINECIISSNDYDGLRKCLIKGIKDQKILAPLLEKIQEIETENNKFSRQHLSGLKLALNNSNNRTFLIASC
AICEKRKKEMEQENNHQDTTNASEFGATDTKENEAKDATFSNNRSKSELPNSVINQIEQSIAHGKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0538 NP_207334.1 cag pathogenicity island protein (cag17) Virulence cag PAI Protein 1e-127 98
cagN YP_005774533.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-128 98
cagN YP_005775738.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-127 97
HP0538 BAD13817.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-123 97
HP0538 BAD13871.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-127 97
HP0538 BAD13954.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-123 97
cagN YP_003728726.1 cag pathogenicity island protein N Virulence cag PAI Protein 6e-126 97
cag17 AAR03930.1 Cag17 Virulence cag PAI Protein 2e-126 97
cag17 AAR03872.1 Cag17 Virulence cag PAI Protein 5e-127 97
HP0538 BAD13844.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-123 96
HP0538 BAD14036.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-125 96
HP0538 BAD14063.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-123 96
HP0538 ABC25004.1 cag pathogenicity island protein N Virulence cag PAI Protein 1e-121 96
HP0538 BAD13790.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-122 96
cagN YP_005779055.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-122 96
cagN YP_005777279.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-122 96
HP0538 BAD13981.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-125 96
HP0538 BAD14009.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-122 96
cag17 AAR03961.1 Cag17 Virulence cag PAI Protein 4e-124 96
cagN AAF80207.2 CagN Virulence cag PAI Protein 7e-125 95
HP0538 BAD13926.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-124 95
HP0538 BAD13899.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-122 95
cagN NP_223204.1 cag island protein Virulence cag PAI Protein 3e-125 95
cag17 AAR03900.1 Cag17 Virulence cag PAI Protein 6e-123 95

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPKB_0805 YP_005762313.1 cag pathogenicity island protein N VFG0297 Protein 5e-128 98