|
Name : HPKB_0803 (HPKB_0803) Accession : YP_005762311.1 Strain : Helicobacter pylori 52 Genome accession: NC_017354 Putative virulence/resistance : Virulence Product : cag pathogenicity island protein (cag19) Function : - COG functional category : - COG ID : - EC number : - Position : 841760 - 842905 bp Length : 1146 bp Strand : + Note : - DNA sequence : GTGAAATGTTTTTTAAGCATATTTTCTTTCTTAACTTTTTGTGGCTTGTCTTTAAATGGTGCAGGGGCAGTAATAACGCT TGAACCTGCCTTAAAAGCCATTCAAGCGGATGCACAAGCCAAACAAAAAACCGCTCAAGCCGAATTAAAAGCCATAGAGG CTCAATCTAGTGCCAAAGAAAAAGCCATTCAAGCACAAATAGAGGGAGAATTGAGAACTCAGCTTGCAACTATAAGCGCT ATGTTAAAAGGGGCTAATGGCGTTATTAATGGTGTCAATAGCATGACAGGGGGGTTTTTTGCAGGTTCAGACATCTTGCT TGGCATCATGGAAGGGTATTCAAGCGCACTTAGCGCATTGGGAGGAAATGTCAACATGATCGTGGAAAAACAAAAAATTA ATACCCAAACAGAAATCCAAAACATGCAAATCGCGCTCCAAAAAAATAACGAAATGATCAAGCTCAAAATGAACCAGCAA AACGCTCTCTTAGAAGCGTTAAAAAACAGCTTTGAACCGAGCGTTACCCTAAAAACACAAATGGAAATGCTTTCTCAAGC TCTAGGAAGTTCTTCTGACAACGCTAAATACATCGCTTACAATACGATTGGTATCAAGGCGTTTGAAGAAACCTTAAAAG GTTTTGAAACATGGTTGAAAGTGGCTATGCAAAAAGCGACCCTTATTGACTACAATTCCCTAACAGGTCAGGCTTTGTTT CAAAGTGCCATCTATGCGCCTGCTCTTAGTTTTTTTTCAAGCATGGGCGCACCATTTGGAATCATTGAAACATTTACTCT AGCGCCCACAAAATGCCCCTATCTTGATGGGCTAAAAATTTCAGCATGCCTTATGGAACAGGTTATTCAGAATTACAGAA TGATTGTAGCCCTTATTCAAAATAAACTGAGTGATGCAGATTTTCAAAATATCGCTTATTTGAATGGGATCAATGGAGAA ATCAAAACCTTAAAAGGATCAGTAGATTTGAATGCGCTCATAGAAGTTGCTATCTTAAACGCAGAAAATCATTTAAACTA TATAGAGAATCTTGAAAAAAAAGCCGACCTTTGGGAAGAACAACTGAAATTAGAGAGAGAAACGACAGCAAGAAACATTG CTAGCTCTAAAGTTATTGTCAAATGA Protein sequence : MKCFLSIFSFLTFCGLSLNGAGAVITLEPALKAIQADAQAKQKTAQAELKAIEAQSSAKEKAIQAQIEGELRTQLATISA MLKGANGVINGVNSMTGGFFAGSDILLGIMEGYSSALSALGGNVNMIVEKQKINTQTEIQNMQIALQKNNEMIKLKMNQQ NALLEALKNSFEPSVTLKTQMEMLSQALGSSSDNAKYIAYNTIGIKAFEETLKGFETWLKVAMQKATLIDYNSLTGQALF QSAIYAPALSFFSSMGAPFGIIETFTLAPTKCPYLDGLKISACLMEQVIQNYRMIVALIQNKLSDADFQNIAYLNGINGE IKTLKGSVDLNALIEVAILNAENHLNYIENLEKKADLWEEQLKLERETTARNIASSKVIVK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| HP0540 | BAD14038.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 2e-159 | 99 |
| cag19 | AAR03902.1 | Cag19 | Virulence | cag PAI | Protein | 8e-160 | 99 |
| cagI | YP_005774531.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 3e-152 | 98 |
| cagI | AGC69802.1 | cag pathogenicity island protein I | Virulence | cag PAI | Protein | 4e-158 | 98 |
| cagI | YP_005777281.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 5e-157 | 98 |
| cag19 | AAR03963.1 | Cag19 | Virulence | cag PAI | Protein | 2e-158 | 98 |
| HP0540 | BAD13792.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 2e-157 | 98 |
| cagI | YP_005779053.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 3e-157 | 98 |
| HP0540 | BAD14011.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 2e-157 | 98 |
| cagI | YP_003728724.1 | cag pathogenicity island protein I | Virulence | cag PAI | Protein | 2e-158 | 98 |
| HP0540 | BAD13873.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 1e-158 | 98 |
| HP0540 | BAD13846.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 2e-157 | 98 |
| cagI | YP_005775740.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 1e-158 | 98 |
| cagI | AAF80208.1 | CagI | Virulence | cag PAI | Protein | 7e-159 | 98 |
| HP0540 | NP_207336.1 | cag pathogenicity island protein (cag19) | Virulence | cag PAI | Protein | 9e-159 | 98 |
| cagI | NP_223206.1 | cag island protein | Virulence | cag PAI | Protein | 3e-159 | 98 |
| HP0540 | BAD13928.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 8e-158 | 98 |
| cag19 | AAR03874.1 | Cag19 | Virulence | cag PAI | Protein | 8e-158 | 97 |
| HP0540 | BAD13819.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 6e-157 | 97 |
| HP0540 | BAD14065.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 5e-157 | 97 |
| cag19 | AAR03932.1 | Cag19 | Virulence | cag PAI | Protein | 2e-158 | 97 |
| HP0540 | BAD13956.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 1e-157 | 97 |
| HP0540 | BAD13901.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 1e-157 | 97 |
| HP0540 | BAD13983.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 3e-154 | 97 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| HPKB_0803 | YP_005762311.1 | cag pathogenicity island protein (cag19) | VFG0299 | Protein | 4e-159 | 98 |
